Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0915 ATGCTTCCAAACTTTGTTGTTGTGATGAAGTGGGAAATGGAAGTCCTCTCTCCTTTACCATATATTGACAACAACAACAACTCCAACACTAAATGGACTCTTGAAGAGAACAAATTGTTTGAGAATGCTCTTGCAGTGCATGATAAGGACACTCCAGATAGATGGCACAAAGTGGCAGAAATGATACCAGGAAAAACAGTTAGGGATGTTATGAGACAGTACATGGAGTTAGAAGCAGATGTTAGTGACATAGAAGCTGGGTTGATCCCAATTCCTGGTTATAAGAATATCACATCACCCTTCACCTTAGATTGGGTTAACTCTTATGGCTATGATGATGGGTTTAAAGGAATCATTGCAAAGAGATCTTCCTCTGCTAGACCTCTTGAACAGGAAAGGAAGAAAGGAGTGCCATGGAGTGAAGAAGAACACAAATTGTTTCTACTGGGATTGAAGAAGTATGGCAAAGGTGATTGGCGAAATATTTCTCGCAATTTTGTTATAACAAGAACCCCGACTCAGGTGGCTAGTCATGCTCAGAAGTACTTCATCAGACAAATTTCAGGGGGGAAAGACAAAAGAAGAGCTAGCATACATGACATAACAATTGTTAATCTTGCCGATAGCAGAAGAATTTCTCCGTCCGAAGACAGCAAGAGTTCCATTTCACCACAGCATTCCATGATGCTCACACACCAGCAGCCTCAAAATCTTACTCCAACCACATCCAGAGCCTATTTTCAGTGGAATCATAAGCCTGATGCAGGGTTAGCTATGGCACTCAACACTTCACATGAAGAAGTATACATGTCTCCTTATGAGGTTAACTCCTATGAATCTAAAATGCTCGGCCAAAATCTGCATAGAAATGCTCTTCATGAGTTTTCTTACTTAGTACCTCAACCACAAAACATGGTTTTTCAAATGCAATCCACCCAACATTATTCTCATGCATGA 957 0.4054 MLPNFVVVMKWEMEVLSPLPYIDNNNNSNTKWTLEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVRDVMRQYMELEADVSDIEAGLIPIPGYKNITSPFTLDWVNSYGYDDGFKGIIAKRSSSARPLEQERKKGVPWSEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQISGGKDKRRASIHDITIVNLADSRRISPSEDSKSSISPQHSMMLTHQQPQNLTPTTSRAYFQWNHKPDAGLAMALNTSHEEVYMSPYEVNSYESKMLGQNLHRNALHEFSYLVPQPQNMVFQMQSTQHYSHA 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0915 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Lal5g0915 318 SUPERFAMILY Homeodomain-like 30 82 IPR009057 -
Lal5g0915 318 ProSiteProfiles SANT domain profile. 27 77 IPR017884 -
Lal5g0915 318 SMART sant 135 185 IPR001005 -
Lal5g0915 318 SMART sant 28 80 IPR001005 -
Lal5g0915 318 CDD SANT 138 183 IPR001005 -
Lal5g0915 318 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Lal5g0915 318 PANTHER MYB TRANSCRIPTION FACTOR MYB51 23 292 - -
Lal5g0915 318 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Lal5g0915 318 Pfam Myb-like DNA-binding domain 31 75 IPR001005 -
Lal5g0915 318 ProSiteProfiles Myb-like domain profile. 24 78 IPR001005 -
Lal5g0915 318 SUPERFAMILY Homeodomain-like 132 186 IPR009057 -
Lal5g0915 318 Gene3D - 137 187 - -
Lal5g0915 318 CDD SANT 31 77 IPR001005 -
Lal5g0915 318 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 292 IPR043363 -
Lal5g0915 318 Gene3D - 23 91 - -
Lal5g0915 318 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Lal5g0915 318 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0915 Lal-Chr5 10961450 10963494 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal5g0915 Myb_DNA-binding 4.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0915 - - gmx:100784163 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0915 5 10961450 10963494 Lal5g0915 5 10961450 10963494 ECH
Lal5g0915 5 10961450 10963494 Lal22g0242 22 1511667 1513969 ECH
Lal5g0915 5 10961450 10963494 Lal3g0575 3 4350942 4353198 ECH
Lal1g2221 1 24169617 24171443 Lal5g0915 5 10961450 10963494 ECH
Lal2g1901 2 21263653 21266258 Lal5g0915 5 10961450 10963494 ECH