Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0901 ATGGACATGGACTACAAACCAAATAACCATGAACACAACAGTCAGACCACAACAGCAGGTCAACCAGCCCGTGCAGCAGCGGTATCATACCACCAACTCCTCCTTGCCCTCGTCTTTGTCCTCGTCGAACACCTAAAGAACCTGTTTCAGCAACTCAAGGATGATTGTATGTTGTGTTGGTTCGACCTCCAAAACATGGTTCGTGGTATAGTAAACTTGATGAAGATAATTTCTCCTGTTGGCAATGATCATAATGAAGGAATGAAGGGAGAAGAATTCCATATTGAAATGCAAAACCAGAAAGAACTCAATGAAGACAAAGAGAACGACATAAATATTGTTGGCCAATCCTCAGAGCATTGTTGTGGTGTATGCCTCGAGTTCAAAGGAAAATCTGATACGATAAGACTAAGAGATAAGTGCAACCACCCCTTTGGAATTGAACACATATCCAACCATGTGGCTGCCCAAATACAGCAACTCAAGGATGACTGTGTACAGTTTCGGTTGGAGCTCCAAAGATTTTCTGATATGATGCAGAAGTTGATGAATAGAACAAGTGTCGTTGATCATGATCATGGTGAACAAATGAAGACAGAAGAGTTCCATTTACAAAAGCAGAAGGAAGAAGACAAAGATAACAATGTAAAGGTGGTTGACCAACCCTCAGAATGTTTTTGTGGTATATGCCTAGATTTCAAAGCAGAATCTGATATGTTCAGAGGAGGTAAGTGCAACGATCTGTTTTGCATTGACTGCATATCCAAGCATGTGGCTTCTAAAATACAGCAAAACAATTTGGAGGTGAAATGCCCAATTCCAAGCTGTAGTGTGGAAATAAAGCCAGAATATCTTCTGTCCATTTTGCCTAAGGATGTTATTGATAGATGGGAGTCTGCAAAATATGAGTCTTCTATTACTCTTTCACAGAAGTTTTACTGCCCCTTTAAGAATTGCTCTGTTCTATTGGTGAATGATGGAAAAAAGGGAAAACCCGTGACCAGATGTGAGTGCCCCTACTGTCACAGGCTATTCTGTGCACAGTGTAAGATTCCATGGCATGCAGAAATGAGTTGCAAGGAATTCCAAATGTTGAAAAAGAATAAAGGTGAAAATTATTTGGATATGAAGTTTTTGGAGTCAGCCAAAGCTAACAAGTGGCCAAAATGTCCAAACTGCTCTTTCTATGTCCAGAGGAGAAGTGTGGATGCAACTTCTGTTATAAGTGTGGGGCAAAATGGAAGTTCGGACATACATGCAAATAGTCATCAGTCAACATAA 1281 0.4044 MDMDYKPNNHEHNSQTTTAGQPARAAAVSYHQLLLALVFVLVEHLKNLFQQLKDDCMLCWFDLQNMVRGIVNLMKIISPVGNDHNEGMKGEEFHIEMQNQKELNEDKENDINIVGQSSEHCCGVCLEFKGKSDTIRLRDKCNHPFGIEHISNHVAAQIQQLKDDCVQFRLELQRFSDMMQKLMNRTSVVDHDHGEQMKTEEFHLQKQKEEDKDNNVKVVDQPSECFCGICLDFKAESDMFRGGKCNDLFCIDCISKHVASKIQQNNLEVKCPIPSCSVEIKPEYLLSILPKDVIDRWESAKYESSITLSQKFYCPFKNCSVLLVNDGKKGKPVTRCECPYCHRLFCAQCKIPWHAEMSCKEFQMLKKNKGENYLDMKFLESAKANKWPKCPNCSFYVQRRSVDATSVISVGQNGSSDIHANSHQST 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0901 426 MobiDBLite consensus disorder prediction 1 20 - -
Lal5g0901 426 Pfam IBR domain, a half RING-finger domain 296 359 IPR002867 -
Lal5g0901 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 310 IPR013083 -
Lal5g0901 426 SUPERFAMILY RING/U-box 222 308 - -
Lal5g0901 426 SUPERFAMILY RING/U-box 309 364 - -
Lal5g0901 426 SMART ibrneu5 295 359 IPR002867 -
Lal5g0901 426 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 101 163 IPR031127 GO:0004842|GO:0016567
Lal5g0901 426 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 188 401 IPR031127 GO:0004842|GO:0016567
Lal5g0901 426 ProSiteProfiles TRIAD supradomain profile. 223 426 IPR044066 -
Lal5g0901 426 ProSiteProfiles Zinc finger RING-type profile. 227 273 IPR001841 -
Lal5g0901 426 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 101 163 - -
Lal5g0901 426 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 188 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0901 Lal-Chr5 10769365 10776365 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0901 227 398 C3H Transcription Factor Family AT2G19610 29.891 1.51e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0901 K11975 - lang:109340029 751.125