Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0898 ATGGACATGGACTACAAACCAAATAACACAACAGCAGGTCAACCAGCCCGTGCAGCAGCGGCGTCCTACCACCAACTCCTCCTTGCCCTCGTCCTTGTCCTCGTCGAACACCTCAAGAACCTATTTCAGCAACTCAAGGATGATTGTATGCTGTGTTGGTTCGACCTCCAAAACATGGTTCGTGGTATAGTAAACTTGATGAAGATAACCTCTCCTGTTGGTGATGATCACAATGAAGGAATGAAAGGAGAAGAATTCCATATTGAGAAGCAAAACCAGAAAGAACTCAGTGAAGACAAAGAGAACGACACAAATATTGTTGGCCAATCCTCAGAGCATTGTTGTAGTGTATGCCTCGAGTTCAAAGGAAAACCTGATACGATAAGACTAAGAGATAAGTGCAACCACCCCTTTGGAATTGAACACATATCCAACCATGTGGCTGCCCAAATACAGCAACTCAAGGATGACTGTGTAGAGTTTCGGTTGGAGCTCCAAAGATTTTCTGATATGATGCAGAACTTGATGAATAGAACAAGTGTCGTTGATCAAGATCATGGTGAACAAATGAAGACAGAAGAGTTCCATTTACAAAAGCAGAAGGAAGGAGACAAAGAAAACAATGTAAAGGTGGTTGACCAACCCTCAGAATGTTTTTGTGGTATATGCCTAGATTTCAAAGCAGAATCTGATATGTTCAGAGGAGGTAAGTGCAATGATCTGTTTTGCATTGACTGCATATCCAAGCATGTGGCTTCTAAAATACAGCAAAACAATTTGGAGGTGAAATGCCCAATTCCAAGCTGTAGTGTGGAAATAAAGCCAGAATATCTTCTGTCCATTTTGCCTAAGGATGTTATTGATAGATGGGAGTCTGCAAAGTATGAGTCTTCTATTACTCTTTCACAGAAGTTTTACTGCCCCTTTAAGAATTGCTCTGTTCTATTGGTGAATGATGGAAAAAAGGGAAAACTTGTGACCAGATGTGAATGCCCCTACTGTCACAGGCTATTCTGTGCACAGTGTAAGATTCCATGGCATGCAGAAATGAGTTGTAAGGAATTCCAAATGTTGAAAAAGAATAAAGGTGAAAATTATTTGGATATGAAGTTTTTGGAGTCAGCCAAAGCTAACAAGTGGCCAAAATGTCCAAACTGTTCTTTCTATGTCCAAAGGAAAAGTGGATGTGAACACATGACCTGCAGGTGTGGATGCAACTTCTGTTATAAGTGTGGGGCAAAATGGAAGTTCGGACATACATGCAAATGGTTATCAGTCAACATAAGATTTCACAGGTACCCACCCAAGGCAGTTCAAGGCCGGCAACTGCCTGGTTCAGCCCAAGATCTGACAAATCTCCAAGGTCAGTTATTTCTCGGATCATCAAGCAAGACAACATGGATACTGGCAAGCCCTGTTCAACACGAAAGAACAAGATTAAACTAA 1446 0.4149 MDMDYKPNNTTAGQPARAAAASYHQLLLALVLVLVEHLKNLFQQLKDDCMLCWFDLQNMVRGIVNLMKITSPVGDDHNEGMKGEEFHIEKQNQKELSEDKENDTNIVGQSSEHCCSVCLEFKGKPDTIRLRDKCNHPFGIEHISNHVAAQIQQLKDDCVEFRLELQRFSDMMQNLMNRTSVVDQDHGEQMKTEEFHLQKQKEGDKENNVKVVDQPSECFCGICLDFKAESDMFRGGKCNDLFCIDCISKHVASKIQQNNLEVKCPIPSCSVEIKPEYLLSILPKDVIDRWESAKYESSITLSQKFYCPFKNCSVLLVNDGKKGKLVTRCECPYCHRLFCAQCKIPWHAEMSCKEFQMLKKNKGENYLDMKFLESAKANKWPKCPNCSFYVQRKSGCEHMTCRCGCNFCYKCGAKWKFGHTCKWLSVNIRFHRYPPKAVQGRQLPGSAQDLTNLQGQLFLGSSSKTTWILASPVQHERTRLN 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0898 481 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 181 421 - -
Lal5g0898 481 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 89 156 - -
Lal5g0898 481 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 181 421 IPR031127 GO:0004842|GO:0016567
Lal5g0898 481 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 89 156 IPR031127 GO:0004842|GO:0016567
Lal5g0898 481 ProSiteProfiles Zinc finger RING-type profile. 220 266 IPR001841 -
Lal5g0898 481 SUPERFAMILY RING/U-box 215 301 - -
Lal5g0898 481 ProSiteProfiles TRIAD supradomain profile. 216 430 IPR044066 -
Lal5g0898 481 SUPERFAMILY RING/U-box 371 424 - -
Lal5g0898 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 302 IPR013083 -
Lal5g0898 481 Coils Coil 151 171 - -
Lal5g0898 481 SUPERFAMILY RING/U-box 302 357 - -
Lal5g0898 481 Pfam IBR domain, a half RING-finger domain 289 352 IPR002867 -
Lal5g0898 481 Pfam IBR domain, a half RING-finger domain 366 421 IPR002867 -
Lal5g0898 481 SMART ibrneu5 364 421 IPR002867 -
Lal5g0898 481 SMART ibrneu5 288 352 IPR002867 -
Lal5g0898 481 Gene3D - 349 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0898 Lal-Chr5 10729043 10734088 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0898 220 413 C3H Transcription Factor Family AT2G19610 32.850 2.44e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0898 K11975 - lang:109340029 809.29