Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0896 ATGATGTCTTATTCCAGAAGATCAAGGTATTCTCCTTCTCCATCTCCATACAAGAGATACCAAAAATATTCTCCTTCTCCATCTCTTTCAAGGTCGAGATCTAGAAGCCGATCAAGGAGCCTTTCGAGGGATGTAGAAAATCCAGGTAACAATTTGTATGTGACGGGGTTGTCTCATAGGATCACTAAAAGAGACCTGGAGAAGCATTTTGCTGCTGAGGGAAAGGTGGTTGATGTAAATCTGGTAGTTGATCCATGGACAAGAGAATCCCGTGGGTTTGGCTTTGTAACGATGGACTCTGTTGAGGAAGCTGATCGATGTGTGAAGTATCTGAACCGCTCTGTACTTGAAGGAAGAGTGATCATGGTGGAGAAGGCCAGAAGGAAACGTGGTCGAACTCCAACACCAGGGAGATATCTTGGGCTGAGGACTATTCGCGCACATCGTCGCTCTCCAAGCGACTCTCCACATCACTCTCCTAGCTACTCTTCTCGTCGTTCTCCAAGTTATTCTCCTTACAGAAGAAGCTACAGTCGATCCCCATATTCAGATCGTAGCAGGAGTCGCTCTTACTCTCCTCACTATCGTCGGCGGAGGTCATACTCTCCTGACTATCGTAGGCGCAGATCATACTCCCCATATTATAGCCGACGACATAGGTCATATTCTCGATCCCGCTCTCCTTACAGCAGGTCACCAGTCAGATATGACTCACGTGACGATCACTACTACCGAAGGCATTCTCGTAGGTCCATTTCGCGAAGTGTCTCACCTAATGATCACTACAGAAGGCACTGTTATAGGTCAATTTCACGAAGTGTCACACCTGATGATCACTACAGAAGGCACCGTTATAGGTCAATTTCACGAAGTGTCACACCTATGCCAAGGAAGAGCTATACACGCAGTGTCACTCCTGTTCGGAGGTTCAGTTCAAGGAGGAGCTACTCACCGAGTGTTTCACCTAGAACTAAGAGGAGCTACTCACGAAGTATTTCCCCCAGACCAAGGAAAGGGAGTTCTGGGAGGAGTTACCCAAGAAGCTCTAAAAGAAGTGACGGTTATTCGAAACGTAGAGACTCAGATGACAGTGAATGTGACTCAAGAACCACAAGTGTGAGTGCAAGTTCAAGATTAGTATCAAGGTCTAACACTCCTATATCTGCCTCTCCTTCATCTTAA 1182 0.4653 MMSYSRRSRYSPSPSPYKRYQKYSPSPSLSRSRSRSRSRSLSRDVENPGNNLYVTGLSHRITKRDLEKHFAAEGKVVDVNLVVDPWTRESRGFGFVTMDSVEEADRCVKYLNRSVLEGRVIMVEKARRKRGRTPTPGRYLGLRTIRAHRRSPSDSPHHSPSYSSRRSPSYSPYRRSYSRSPYSDRSRSRSYSPHYRRRRSYSPDYRRRRSYSPYYSRRHRSYSRSRSPYSRSPVRYDSRDDHYYRRHSRRSISRSVSPNDHYRRHCYRSISRSVTPDDHYRRHRYRSISRSVTPMPRKSYTRSVTPVRRFSSRRSYSPSVSPRTKRSYSRSISPRPRKGSSGRSYPRSSKRSDGYSKRRDSDDSECDSRTTSVSASSRLVSRSNTPISASPSS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0896 393 MobiDBLite consensus disorder prediction 1 35 - -
Lal5g0896 393 MobiDBLite consensus disorder prediction 292 349 - -
Lal5g0896 393 SUPERFAMILY RNA-binding domain, RBD 40 153 IPR035979 GO:0003676
Lal5g0896 393 CDD RRM_RBMX_like 49 128 - -
Lal5g0896 393 SMART rrm1_1 51 124 IPR000504 GO:0003723
Lal5g0896 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Lal5g0896 393 MobiDBLite consensus disorder prediction 368 393 - -
Lal5g0896 393 MobiDBLite consensus disorder prediction 156 188 - -
Lal5g0896 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Lal5g0896 393 PANTHER TRANSFORMER-2-RELATED 9 290 - -
Lal5g0896 393 MobiDBLite consensus disorder prediction 350 367 - -
Lal5g0896 393 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 9 290 - -
Lal5g0896 393 Gene3D - 4 134 IPR012677 -
Lal5g0896 393 MobiDBLite consensus disorder prediction 1 49 - -
Lal5g0896 393 MobiDBLite consensus disorder prediction 127 393 - -
Lal5g0896 393 MobiDBLite consensus disorder prediction 233 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0896 Lal-Chr5 10644061 10647208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0896 51 140 Eukaryotic Initiation Factors Gene Family AT3G16380 33.333 7.71e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0896 - - gmx:100805126 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0896 5 10644061 10647208 Lal5g0896 5 10644061 10647208 ECH