Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0873 GTCCACAAAAAGGGTTCTGATAATTTCACCCCACACAACACTAACCCACTCCCCAACCTCCACTTTGTCCCTTTCACTCTCATCACTTCTCACACACTCTTCACCCGCTACCCGCTGTCACCGGTTCCTTTCTCTCCTTCTTCCCACCTCCGGTACCGGTACACCCGGTTCCCTTACACGTGTCTTCGCCGTATAACGTCGTGGACCCTTAGTTTTTCTAGGGATCTAAATATGCGGTCCAAGTCTGAAACAAATCCAATGAGGTCGGGTCCACATTCCTTTCAACCTAGCAATGTTTATGCTGAACCTTGGTGGCGTGGTATTGGGTACAATCCCATTGCGCAAACTATATCTGGGGCAAATGCAACCAATTCATCCTCTCTTGATTGCCCTAATGATGATTCAGAATCCAATGAAGGTCAGTCTTTGTCCAATAGTGGTTTGAATGAGGAAGATGATGCTGCTGCTGAAGATTCCCAACTTGCGGCTCCTAATCAAACAGAAAATTATGGACAAGAACAACAAGGGATGCAGCATACTTCAGCATCTGCACCTTCTGTGTGTGAAGATGCCCATACCCAGACTCCACAGCTGGAACTTATTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCATACTATGGGGGCATGATGACAGCCTATGGACACCAGCAGTTGGGATATGCTCCTTTTGTGGGAATTCCACATGCAAGAATGCCTTTGCCTCTTGAGATGGCACAAGAGCCTGTTTATGTGAATGCTAAACAATACCAGGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAGGCAGAACTTGAAAGGAAGCTTATAAAAGCCAGAAAGCCATATCTGCATGAATCTCGTCATCAGCATGCTATGAGAAGGGCAAGGGGTAGCGGAGGACGTTTTGCAAAGAAATCTGATGCTGAGGCCGCAGGGAAGGAAAACGTTATGGGTTCTGGTCCAGTCCTGTCATCACAGTCGATCAGTTCATCTGGTTCCGAACCTTTACCTTCTGATACTGCCGAAACCTGGAATTCTCCAAATATGCTGCAACAAGAAGCAAGAGGATCAACAGGGCACAGCAGGTTGGAAACACCCAATTATGAAAATGGAAGTGGTTCCTATCATAATCATAATGGCATGCAATCTTCAACTTATCATATGCACTCGGGTGAGAGAGCGGAGGAAGGTGACTGCTCTGGTCAGCAAAGGGGAATCATATCTTCTGAGCACGCCTCGCAGAGGCGTCTTGCTATACAGTAA 1275 0.4682 VHKKGSDNFTPHNTNPLPNLHFVPFTLITSHTLFTRYPLSPVPFSPSSHLRYRYTRFPYTCLRRITSWTLSFSRDLNMRSKSETNPMRSGPHSFQPSNVYAEPWWRGIGYNPIAQTISGANATNSSSLDCPNDDSESNEGQSLSNSGLNEEDDAAAEDSQLAAPNQTENYGQEQQGMQHTSASAPSVCEDAHTQTPQLELIGHSIACATNPYQDPYYGGMMTAYGHQQLGYAPFVGIPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKARKPYLHESRHQHAMRRARGSGGRFAKKSDAEAAGKENVMGSGPVLSSQSISSSGSEPLPSDTAETWNSPNMLQQEARGSTGHSRLETPNYENGSGSYHNHNGMQSSTYHMHSGERAEEGDCSGQQRGIISSEHASQRRLAIQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0873 424 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 107 413 - -
Lal5g0873 424 MobiDBLite consensus disorder prediction 122 149 - -
Lal5g0873 424 MobiDBLite consensus disorder prediction 323 392 - -
Lal5g0873 424 ProSitePatterns NF-YA/HAP2 subunit signature. 254 274 IPR018362 GO:0003677|GO:0016602
Lal5g0873 424 MobiDBLite consensus disorder prediction 122 191 - -
Lal5g0873 424 MobiDBLite consensus disorder prediction 160 191 - -
Lal5g0873 424 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 251 306 IPR001289 GO:0003700|GO:0006355
Lal5g0873 424 MobiDBLite consensus disorder prediction 287 424 - -
Lal5g0873 424 ProSiteProfiles NF-YA/HAP2 family profile. 249 309 IPR001289 GO:0003700|GO:0006355
Lal5g0873 424 Gene3D - 249 311 - -
Lal5g0873 424 SMART cbf3 248 309 IPR001289 GO:0003700|GO:0006355
Lal5g0873 424 MobiDBLite consensus disorder prediction 287 303 - -
Lal5g0873 424 MobiDBLite consensus disorder prediction 406 424 - -
Lal5g0873 424 PRINTS CCAAT-binding transcription factor subunit B signature 252 274 IPR001289 GO:0003700|GO:0006355
Lal5g0873 424 PRINTS CCAAT-binding transcription factor subunit B signature 283 306 IPR001289 GO:0003700|GO:0006355
Lal5g0873 424 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 107 413 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0873 Lal-Chr5 10038497 10043346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0873 92 350 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.962 2.09e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal5g0873 CBFB_NFYA 1.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0873 K08064 - gmx:100808378 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0873 5 10038497 10043346 Lal3g0744 3 6395883 6400128 LSH
Lal5g0873 5 10038497 10043346 Lal11g0891 11 11662660 11668151 LSH