Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0854 ATGGAATCGGATCTCGGCAAGCTCTTCATTGGAGGAATATCTTGGGACACTGATGAGGAACGTCTTAAAGAATACTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGAGATCGCACAACCGGTCGTGCTCGTGGTTTCGGTTTTGTTGTCTTTGCTGATCCTGCTGTAGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGACCAGCAGAGTATAAATAGACAGGTCGGTAGTGTACAGACACCTGCGGGTCCTGGACGTACCAAAAAGATTTTCATTGGAGGTTTACCATCAACTATCACCGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTATAATAACAGATGTTGTAGTAATGTATGATCGCAATACTCAGCGGCCAAGAGGTTTTGGCTTCATTACATTTGATTCAGAAGAAGCTGTGGAAAGAGTTCTTTATAGAACTTTTCATGAACTCAGTGGAAAGATGGTTGAAATCAAGAGAGCAGTTCCTAAAGAGCTTTCCCCTGGATCCAACCGGAGCCCATTGATAGGATATAACTATGGTCTGAATAGGGGAGCCAGTAGCTTCCTAAACAGTTATGCTCCGGGTTATAATATGAGTCCGTTAGGAGGATATGGAGTAAGGATGGATGGTGGGTTTAGTCCACTCGCTAGTGGTAGAAGTGGGTTTTCTCCATTTGGCAATACTGCATATGGAATGGGAGTTAACTTGGATTCAGGATTGAGCCCAAGCTATGGAGGGGCTTCTAATTACGGGAGCAATTTAGGATATGGTCGAATATTTAGTCCTTTATACAACGGCAACTCAAACAGATATACCACTCCTATAGGCTATAGTGGGGGTAATGGAAGAAGCGATTCTCTTATGAACTCACCTTCTCGGAATGTCTGGGGGAATGGGGGCCTGAATAATGCCAATAATGCAGTTGGTCCTGGTGCTTTCATGGGATCCGGAAGTGGGAATTTTGGTGTTTCAATTGGAAACAGTGGCACAAATTGGGCTCCATCTTTTCTAGCTCGGGGTGGAGGGGCTGCTTCTGGCTATGCTACTGGTAGTAATGTCTATGAAGGTGGAGATAGCAGTTTAAGATTAGGTGGGGTAGGGTATGGAAGAAACAATGGTATAGGTGTGACTTCATCGTCTACATTTAATGCATCAAATGTTGCTTATGAAGGATCCTATGGGGACATATACCGCAGTGGCAGTGGTTCAGCTTACAATGACTCTACTTGGCGGTCTGCAACTTGTGAGATAGATGGTTCTGCTTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGACGACCCAGCGAAGAGCTCTGAGGGTTATGTCGGAAACTACAATGTTACAAATAGACAATCTACTAGAGGTAACATCTTTTGCTACACTCTTGTCTCCTAA 1461 0.4374 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQQSINRQVGSVQTPAGPGRTKKIFIGGLPSTITESDFKKYFDQFGIITDVVVMYDRNTQRPRGFGFITFDSEEAVERVLYRTFHELSGKMVEIKRAVPKELSPGSNRSPLIGYNYGLNRGASSFLNSYAPGYNMSPLGGYGVRMDGGFSPLASGRSGFSPFGNTAYGMGVNLDSGLSPSYGGASNYGSNLGYGRIFSPLYNGNSNRYTTPIGYSGGNGRSDSLMNSPSRNVWGNGGLNNANNAVGPGAFMGSGSGNFGVSIGNSGTNWAPSFLARGGGAASGYATGSNVYEGGDSSLRLGGVGYGRNNGIGVTSSSTFNASNVAYEGSYGDIYRSGSGSAYNDSTWRSATCEIDGSASFGYGLGGIASDDPAKSSEGYVGNYNVTNRQSTRGNIFCYTLVS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0854 486 MobiDBLite consensus disorder prediction 81 100 - -
Lal5g0854 486 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 477 - -
Lal5g0854 486 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Lal5g0854 486 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Lal5g0854 486 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lal5g0854 486 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal5g0854 486 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Lal5g0854 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Lal5g0854 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lal5g0854 486 Gene3D - 6 88 IPR012677 -
Lal5g0854 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal5g0854 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lal5g0854 486 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lal5g0854 486 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Lal5g0854 486 Gene3D - 103 192 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0854 Lal-Chr5 9709525 9712011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0854 8 181 Eukaryotic Initiation Factors Gene Family AT4G34110 26.705 1.24e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0854 K14411 - gmx:100805131 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0854 5 9709525 9712011 Lal5g0854 5 9709525 9712011 ECH