Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0798 ATGCAGCAACCACCGCCCTCCAACACGCAGTTTCCTCAACAACAGTGGATGATGCAACAGCAGCAGCCCCCCTCCGCCTGGAATCCTCAGCCCATTCCTCACCAAAACGACGCCGCTGCCTCCTCCGCTGGTGAGATCAAGTCTCTCTGGATCGGTGACTTGCAGCAGTGGATGGACGAGTCCTACATCACCAACTGCTTCGCCTCCGGCGGCGAGGTGGTTTCTGTAAAGATCATTCGTAATAAGCAAACAGGCATGCCAGAAGGTTATGGTTTCATTGAATTTACTAACCGTGCTGCAGCGGAGAGGAACTTGCACTTATATAACGGCACATTGATGCCGAACTCTGATCAGAATTTCCGCCTGAACTGGGCCATGCTTGGTCCTGGTGAGAGGCGCCAAGATGATGGTGCGGATCATACAGTATTTGTTGGTGATTTGGCTGTTGATGTTACTGACTATGTACTGCTAGAGACTTTTCGAGTTCATTATCCATCAGTGAAGGGAGCTAAGGTTGTTATTGATCGGTCCACTGGACGGTCAAAGGGCTATGGGTTTGTAAGGTTTGCTGATGAAGGTGAGCAATTGCGTGCAATGACTGAGATGAATGGCATGCCCTGTTCTACTAGACCCATGCGAATTGGTCCTGCTGCAAACAAGAAACCAATGGATGGTCAGCAATATCAGACAGCTTCATACCAGATTACACAGGGAAACCAAGGCGATAATGATCCTAACAATACAACAATATTTGTTGGGAATTTGGACTCAAGTGTGTCTGATGACTTGTTAAGACAAGTTTTTGGTCGGTTTGGGAATCTAGTTCATGTGAAAATACCTGTAGGGAAGCGTTGTGGTTTTGTTCAGTTTGCTGATAGAGCATGTGCTGAGCAAGCACTATCAGCGTTAAGGGGAACAACATTACTAGGACAAGGAATTAGACTTTCATGGGGGCGCAGTCCTAACAAGCAGTCTCCAACAGATCAAGTTCAGTGGAATGGTGCTGCTCCGGCATACTACGGTGGCTACGCCCAAGGATATAACCCTTATGCATATGCACCTACTACCCAAGATCCTAATATGTACTATGGAGGTTACCCTGGATATGGGAATTACCAGCAGCCAGCTAATTACCAGCAGCCGCAGCAGCGTAGCGAGCTTGTAGGGTATTTGAAGCCAGAATCTTGGATTATTGGCATGTTTATCCTCTGTGTATTTTGTTTTTTTAGGGTGACCGGTTTCCGAGTTGTTTTCTGGCAGTCAGCAAGCCTTTGTTTTGGTGTTGGGTGCTTTTCAGATTTGCAATCTCAACTGCCCTTCTGA 1323 0.4732 MQQPPPSNTQFPQQQWMMQQQQPPSAWNPQPIPHQNDAAASSAGEIKSLWIGDLQQWMDESYITNCFASGGEVVSVKIIRNKQTGMPEGYGFIEFTNRAAAERNLHLYNGTLMPNSDQNFRLNWAMLGPGERRQDDGADHTVFVGDLAVDVTDYVLLETFRVHYPSVKGAKVVIDRSTGRSKGYGFVRFADEGEQLRAMTEMNGMPCSTRPMRIGPAANKKPMDGQQYQTASYQITQGNQGDNDPNNTTIFVGNLDSSVSDDLLRQVFGRFGNLVHVKIPVGKRCGFVQFADRACAEQALSALRGTTLLGQGIRLSWGRSPNKQSPTDQVQWNGAAPAYYGGYAQGYNPYAYAPTTQDPNMYYGGYPGYGNYQQPANYQQPQQRSELVGYLKPESWIIGMFILCVFCFFRVTGFRVVFWQSASLCFGVGCFSDLQSQLPF 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0798 440 CDD RRM2_SECp43_like 139 218 - -
Lal5g0798 440 Gene3D - 127 225 IPR012677 -
Lal5g0798 440 Gene3D - 46 126 IPR012677 -
Lal5g0798 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 127 IPR000504 GO:0003723
Lal5g0798 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 320 IPR000504 GO:0003723
Lal5g0798 440 MobiDBLite consensus disorder prediction 1 37 - -
Lal5g0798 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 206 IPR000504 GO:0003723
Lal5g0798 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 312 IPR000504 GO:0003723
Lal5g0798 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 115 IPR000504 GO:0003723
Lal5g0798 440 SUPERFAMILY RNA-binding domain, RBD 15 129 IPR035979 GO:0003676
Lal5g0798 440 CDD RRM3_NGR1_NAM8_like 247 318 - -
Lal5g0798 440 Gene3D - 226 328 IPR012677 -
Lal5g0798 440 CDD RRM1_SECp43_like 48 125 - -
Lal5g0798 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 219 IPR000504 GO:0003723
Lal5g0798 440 SUPERFAMILY RNA-binding domain, RBD 232 347 IPR035979 GO:0003676
Lal5g0798 440 MobiDBLite consensus disorder prediction 1 41 - -
Lal5g0798 440 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 13 380 - -
Lal5g0798 440 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 13 380 - -
Lal5g0798 440 SMART rrm1_1 249 316 IPR000504 GO:0003723
Lal5g0798 440 SMART rrm1_1 48 123 IPR000504 GO:0003723
Lal5g0798 440 SMART rrm1_1 141 215 IPR000504 GO:0003723
Lal5g0798 440 SUPERFAMILY RNA-binding domain, RBD 123 230 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0798 Lal-Chr5 7399486 7404003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0798 41 337 Eukaryotic Initiation Factors Gene Family AT4G34110 29.260 2.94e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0798 - - egr:104450235 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0798 5 7399486 7404003 Lal5g0798 5 7399486 7404003 ECH