LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal5g0667	ATGAAGCAAAGTGGAGGAATGGGAAATGGGTCGCAGGAAAGGAACAAACTTGTTCGAGCTAGTCATGGTTCAGATAGTGGGACTAATAAACCCTTGAAGAATTTGAATGGTCAAGTTTGTCAAATATGTGGTGATACTGTTGGATTTACAACCACAGGTGATGTATTTGTTGATTGTCAAGAGTGTGGCTTCCCACTTTGCCATAATTGCTATGAATATGAGCTGAAAAATGGGAACGAATCTTGCCCCAAGTGCAAAACTAGATACAAGAGTCACAAAGAGATTCCTCAATTGGAGGGAGATGATGATGACGATGATGTTGATAATCCAGAGAATGAGACCAGTTATGGACAAGGAAATACTAAGGCACGGCTGCAGTGGGAAGAAGAAGCTGACCTATCTTCATCTTCTGGACATGATTCTCAACAACCAAAATCTCATGTCACAAATGGGCAGCTGATGTCTGGTAAGATTGCAGGTGCTACTCATAAAAATCAATCTCTGCGACCCACATGCAGTCCTTTGGATCCATCTGGAAGGGTTCACTCACTTCCTTATGTTGATCCAAAGCAACCAGGTCTTGAGAGTGATGAGGAGATCAGAAGAGTGCCGGAGATAGGAGGTGAATTTGCTGGAACATCAGCCGCTCGCCCAGACACTGGTTCAACCGTGGCTCCTGAAAGTGTTCATGGTACAAGGGACGGTAAGAGGAAGAGAGGGAGAAACCCAGCTGACAAAGAAAGCAAGCGATTAAAGAGGCTACTGAGGAACAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCTTACTTGAATGATTTAGAAACTAAAGTCAAAGACTTGGAGGTGAAGAATTCTGAGCTCAAAGAGAGGCTATCTACTTTGCAGAATGAGAATCAAATGCTAAGACAAATACTGAAAAACACAACAGCTAGCAGGAGAGGGAGCAATAGTGGTGCCAATGCTGAATGA	975	0.4369	MKQSGGMGNGSQERNKLVRASHGSDSGTNKPLKNLNGQVCQICGDTVGFTTTGDVFVDCQECGFPLCHNCYEYELKNGNESCPKCKTRYKSHKEIPQLEGDDDDDDVDNPENETSYGQGNTKARLQWEEEADLSSSSGHDSQQPKSHVTNGQLMSGKIAGATHKNQSLRPTCSPLDPSGRVHSLPYVDPKQPGLESDEEIRRVPEIGGEFAGTSAARPDTGSTVAPESVHGTRDGKRKRGRNPADKESKRLKRLLRNRVSAQQARERKKAYLNDLETKVKDLEVKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGANAE	324

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal5g0667	324	Pfam	bZIP transcription factor	246	307	IPR004827	GO:0003700\|GO:0006355
	Lal5g0667	324	Pfam	Zinc-binding RING-finger	30	107	IPR027934	-
	Lal5g0667	324	ProSiteProfiles	Zinc finger RING-type profile.	40	86	IPR001841	-
	Lal5g0667	324	PANTHER	TRANSCRIPTIONAL ACTIVATOR HAC1	165	315	-	-
	Lal5g0667	324	MobiDBLite	consensus disorder prediction	136	150	-	-
	Lal5g0667	324	MobiDBLite	consensus disorder prediction	96	150	-	-
	Lal5g0667	324	PANTHER	TRANSCRIPTIONAL ACTIVATOR HAC1	165	315	IPR044280	GO:0000981\|GO:0045944
	Lal5g0667	324	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	252	267	IPR004827	GO:0003700\|GO:0006355
	Lal5g0667	324	SUPERFAMILY	RING/U-box	25	110	-	-
	Lal5g0667	324	MobiDBLite	consensus disorder prediction	163	197	-	-
	Lal5g0667	324	MobiDBLite	consensus disorder prediction	210	252	-	-
	Lal5g0667	324	Gene3D	Single helix bin	268	309	-	-
	Lal5g0667	324	CDD	bZIP_HY5-like	250	301	-	-
	Lal5g0667	324	SUPERFAMILY	Leucine zipper domain	249	307	IPR046347	GO:0003700\|GO:0006355
	Lal5g0667	324	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	247	310	IPR004827	GO:0003700\|GO:0006355
	Lal5g0667	324	SMART	brlzneu	245	309	IPR004827	GO:0003700\|GO:0006355
	Lal5g0667	324	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	22	114	IPR013083	-
	Lal5g0667	324	Coils	Coil	244	313	-	-
	Lal5g0667	324	MobiDBLite	consensus disorder prediction	230	252	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal5g0667	Lal-Chr5	5563596	5567415	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal5g0667	1	192	Glycosyltransferase	AT4G32410	55.440	2.90e-53	186

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lal5g0667		zf-UDP	1.6e-36	CL0229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal5g0667	K10999		-	aprc:113855639	471.085