Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0476 ATGGATCCTAGTGAATCATTGCCACCTCCACCATCAGCAATTCCTTCAAATGTTGTTCCTATGAAAGCAGCATCATTAAAAACATACGAGCGAGTCGACAAAAAACTCGTTACGAATCGTTTGCCTATGGCTAGGAGAGGTAATGGAACCAAGGGACAGAAGATACAGCTGTTAACTAACCATTTCAGAGTTGGCATGGGAAAGAATGATGGCTTCTTCTATCACTATAGTGTTGCATTGATGTATGAGGACGGGCGTCCTGTTGAAGCCATGGGCATCGGGAGAAAGGTTATTGATAAAATTTCTGAAACATATGATGAATTGCAAAGCAAGAATTTCGCGTATGATGGTGAGAAAAGTCTATTCACCATTGGTGCATTACCGGATAAGAAGCTTAATTTCACTGCCGTGTTGGACGAAGTTACATCGAAGAGGGTTGGAAGTGATGGAAGCCCTGAAAACTATAATGAAGGAAAAGACAAGAGAATGCGGCGTGTTTCTCAGTCGAAAACATTCAAGGTGGAGATAAGTTATGCAGCCAAAATCCCATTGCAAGCAATTCCAAATGCATTGCGGGGTCAAGATTCCGAACACTTCCAGGAAGCAGTGAGGGTTTTGGACATAATACTTAGGCAGCACGCGTCGAAGAAGGGATGTCTCCTCGTTCGCCAGTCATTCTTCCATGACAATCCAAGGAATTACACTGACATCGGTGGCGGCGTTCTTAGTTGCCGTGGTTTCCATTCAAGCTTCCGTGCCACTCAAGGAGGACTATCTCTGAACATTGATGTCTCAAATACAATGATTCTCAAGCCTGGCTCTGTAGTGGACTTCCTCTGTGAAAATCAAAATGTTAGGCATCCAAACATGATTGATTGGGTTAAGGCTAAGAGAATGCTAAAAAACCTTAGAATAAAGGCTAACAATATTGAGTACAAAATCACTGGATTGAGTGACAGTACCTGCAGGAATCAAATATTTTCATTAAAACAAGGAAAGGATTCAAATGGTGACGTCCAGACAATCGAAATTACTGTTTATGAGTACTTTAAACGCCATAAGAAGCTTGATATGGATAAATCTGCTGATTTCCCATGCATCAACGTTGGAAAACCGAAGCGCCCATCTTATTTTCCGGTCGAGCTATGCACTTTGGTCTCATTGCAGAGATACACAAAGGCACTCACAAATTTGCAAAGGGCTCAGCTTGTAGAGAAGTCAAGGCAAAAGCCCAATGAAAGAAAAGCTGCTTTGATTGATTCCTTAAGAAACAGCCGATATGAAAATGAGCCGATGCTTCGTTCTTGTGGAATTACCATTGAACCTGACTTCACTAGAATCGATGGTCGTGTACTGCAACCCCCAAGGCTTAGAGTTGGAAACGGAGAGGACTTTGTGCCGCGAAATGGTCGCTGGAACTTCAACAACAAGAAACTAGTTGATCCGGTGAAGATTGAGCGTTGGGCCATTGTTAACTTCTCAGGACGGTGTGATACACGTTACCTATGTGATACCCTCAAGAAATGTGCTGCAAATAAAGGGATTTTCATAAGTCCACCATTTCGGGTATTTGAAGAGGATAATCGCTCCGCACGTGATCCAGCACCAGTGAGAGTTGAGAAAATGTTTGGTACTGTAAAGTCTATGTTGCCTGGGCCTCCCCAACTTCTGTTGTGTATTCTTCCACAGAGAAAAAATTCTGACATTTATGGCCCATGGAAAAGGAGAAGTCTTGCCGAGGAAGGCGTTGCCACACAATGCATTGCTCCAACAAAAATCAATGACCAGTACATTACAAATGTTCTCTTAAAGGTTAATGCAAAGCTTGGTGGCATGAATTCCTTTCTTTCTGTAGAGCCTTCACATTCTATACCTTTAGTTTCAAGCGTGCCTACGTTAATTATTGGTATGGATGTTTCGCACGGATCTCCTGGTCGATCAGATGTTCCTTCTATCGCTGCGGTTGTCAGCTCAAGATGCTGGCCTCTTATTTCACGTTATAGAGCCGCAGTTCGCACTCAGTCATCGAGAGTCGAAATGATACAGTCTTTATTCAAGCCTGTTTCTGATACCGCGGATGAAGGTATCATGAGGGAACTGCTTTTGGACTTTGAAATAACTTCAGGAAAAAGAAAGCCTCAGCACATTATAATTTTTAGCGATTCATTCTTCTTGCTTAGTGACCACGAGGTGACGCAACGGTTATTGCTTAGTGACTGTGAGATCACTGGACCAAATCTTGGAAACAGCCTCTCTGCTTACAGGGGAAAGGCTGCGTACATCTACCCTCCCCATACCCCACTAAGTGGGAGCCTCGTGCAATGGGCGACTCATTCATTCTTCTTGCTTAGTGACACAATGGTAAGTTTCTTGCTTAGTGACCGTGAGATCACTGGATCAAATCTTGGAAATAGCCTCTCTGCTTGCAAGCGAAAGACTGTACATCTAACGTCCCCATACCCCATTAAGGATGGAGTGAGTGAATCACAGTTCAACCAGGTCCTAAACCATGAGTTGAATGACATGATCAAGGCATGTGAACATCTTGATGAAAGTTGGTCTCCAAAGTTTACTGTGATTATTGCTCAGAAGAATCACCACACAAAGTTCTTCCAAGCAAATTCTCCTGAGAATGTTCCACCAGGGACTGTTATAGACAACAAAATTTGTCATCCACATAACAATGATTTCTATATGTGTGCTCAGGCTGGTATGATTGGAACCACTAGACCTACACATTACCATGTTCTACATGATGAGATTGGATTCTCAGCTGATGATTTGCAAGAACTGGTTCATTCACTATCTTATGTTTATCAGAGGAGCACTACTGCAATATCAGTTGTTGCGCCTGTTTGCTATGCACATTTGGCAGCTGCTCAGATGGGACAGTTTATGAAATTTGATGAATTCTCAGAGACTTCTTCAAGTCATGGTGGCATGACATCTATTGGTGTACCACAAGTTCCTCAATTACCCCTTCTACATGAAGATGTTACAAATTCCATGTTCTTTTGTTAA 3021 0.426 MDPSESLPPPPSAIPSNVVPMKAASLKTYERVDKKLVTNRLPMARRGNGTKGQKIQLLTNHFRVGMGKNDGFFYHYSVALMYEDGRPVEAMGIGRKVIDKISETYDELQSKNFAYDGEKSLFTIGALPDKKLNFTAVLDEVTSKRVGSDGSPENYNEGKDKRMRRVSQSKTFKVEISYAAKIPLQAIPNALRGQDSEHFQEAVRVLDIILRQHASKKGCLLVRQSFFHDNPRNYTDIGGGVLSCRGFHSSFRATQGGLSLNIDVSNTMILKPGSVVDFLCENQNVRHPNMIDWVKAKRMLKNLRIKANNIEYKITGLSDSTCRNQIFSLKQGKDSNGDVQTIEITVYEYFKRHKKLDMDKSADFPCINVGKPKRPSYFPVELCTLVSLQRYTKALTNLQRAQLVEKSRQKPNERKAALIDSLRNSRYENEPMLRSCGITIEPDFTRIDGRVLQPPRLRVGNGEDFVPRNGRWNFNNKKLVDPVKIERWAIVNFSGRCDTRYLCDTLKKCAANKGIFISPPFRVFEEDNRSARDPAPVRVEKMFGTVKSMLPGPPQLLLCILPQRKNSDIYGPWKRRSLAEEGVATQCIAPTKINDQYITNVLLKVNAKLGGMNSFLSVEPSHSIPLVSSVPTLIIGMDVSHGSPGRSDVPSIAAVVSSRCWPLISRYRAAVRTQSSRVEMIQSLFKPVSDTADEGIMRELLLDFEITSGKRKPQHIIIFSDSFFLLSDHEVTQRLLLSDCEITGPNLGNSLSAYRGKAAYIYPPHTPLSGSLVQWATHSFFLLSDTMVSFLLSDREITGSNLGNSLSACKRKTVHLTSPYPIKDGVSESQFNQVLNHELNDMIKACEHLDESWSPKFTVIIAQKNHHTKFFQANSPENVPPGTVIDNKICHPHNNDFYMCAQAGMIGTTRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFDEFSETSSSHGGMTSIGVPQVPQLPLLHEDVTNSMFFC 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0476 1006 Pfam N-terminal domain of argonaute 53 210 IPR032474 -
Lal5g0476 1006 Pfam Piwi domain 823 967 IPR003165 GO:0003676
Lal5g0476 1006 Pfam Piwi domain 557 721 IPR003165 GO:0003676
Lal5g0476 1006 SMART DUF1785_2 220 272 IPR014811 -
Lal5g0476 1006 CDD Piwi_ago-like 431 961 IPR045246 -
Lal5g0476 1006 Gene3D paz domain 266 391 - -
Lal5g0476 1006 CDD PAZ_argonaute_like 272 386 - -
Lal5g0476 1006 Gene3D - 451 617 - -
Lal5g0476 1006 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 5 722 - -
Lal5g0476 1006 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 822 1005 - -
Lal5g0476 1006 Gene3D - 624 733 IPR036397 GO:0003676
Lal5g0476 1006 SUPERFAMILY Ribonuclease H-like 788 965 IPR012337 -
Lal5g0476 1006 SUPERFAMILY Ribonuclease H-like 447 725 IPR012337 -
Lal5g0476 1006 ProSiteProfiles PAZ domain profile. 312 387 IPR003100 GO:0005515
Lal5g0476 1006 Pfam Argonaute linker 2 domain 413 458 IPR032472 -
Lal5g0476 1006 Pfam PAZ domain 276 403 IPR003100 GO:0005515
Lal5g0476 1006 Gene3D - 806 1006 IPR036397 GO:0003676
Lal5g0476 1006 Pfam Argonaute linker 1 domain 222 269 IPR014811 -
Lal5g0476 1006 ProSiteProfiles Piwi domain profile. 556 967 IPR003165 GO:0003676
Lal5g0476 1006 SMART Piwi_a_2 556 967 IPR003165 GO:0003676
Lal5g0476 1006 SUPERFAMILY PAZ domain 267 426 IPR036085 GO:0005515
Lal5g0476 1006 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 5 722 - -
Lal5g0476 1006 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 822 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0476 Lal-Chr5 4886504 4894578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0476 45 785 Eukaryotic Initiation Factors Gene Family AT5G43810 31.688 7.55e-95 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0476 K11593 - vvi:100241029 994.956