Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0473 ATGGCTTTGAGGTTTATAACGATTTCGGCAATTTCAACGGTGTTAAGTTTTGTGGGTCTGCAGTTTTGCGCAGACTTCTCTTTAGATACACTTAAATCAGATGGTCTAGCTGGTTGGGATGTAATGCCATTGGACAATGCCAACCATGACGCAAAGTTACCTTTGGGTTTGTTCACTACTGTAGGGCTACTAGCAAATTGCATGATCAATGTATTTATCCTTCTCAATCTTTGTCTGAAGGCTATGTTCTTCACAGAGTTGTATTCTTCTGAAACTCGTAAACTGGTTGAGCGTCTAATTAATTATGTTGTTTACAAGGTTATTCTTCTGTTTCTGCAGCTTATTAAAGGGACATTCCTACCACTTATTGTGCCACCAACTATATATCAGGCTGGACTTTGGTCAATTTGGCTGGCTGTGCTCTGTTCTTTAAAGATGTTTCAAGCTTTAGCTAGAGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGCTACAACCTGGACATATCTTCGTGTATATTCAGCATTGATAAGGCTATGTCTAGCGATATATAGAATGCATGGGTCCTCTTTGTTTCTGTTACTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCTTACAGGCCATTTTGGTACATGGATTTCAGTTAGTTGATATATGGTGCAACAACAGTGATTGCCGAAGGCCTAAACTGTTTGACTCAATAACAGCAGGTTCACTATTGGAATATAAGGGAATTCTTATTCGGAACTTGGGATTTTTCTTAGACATGGCAACATTTTTTATGGCACTAGGCCATTACATGTATATATGGCGGCTTCATGGCGTGGCATTCCATCTTGTAGATGCATTGCTATTTCTTAACACACGTGCATTACTTAGTGCAATTGTAAATCGCATAAAAGGCTTTATTAGGCTAAGGATAGCTCTAGGAGCTCTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCTTATGATGATGAATGTGCTATTTGTAGAGAACCCATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTCTTTCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGATATGTATACTTGTCCTACATGTCGAAAGCCTCTTTTTGCAGGCCGACCTGAAAATGACGCAAACTCCACTACGGAGATATCAAGCGATGAGCAACTTGCACGCCAAATGAGTACAGGACTTGGTCGGACAAACTCTGCTAATACCATCCCTGCAGGATTGCATCCCAATCAGACACCAAATTTTGTGGAAGGTGTTCCTTGGAGGGGTGCAGGACTGGATGCAGGTTGGTTGCACTCATGGCCAAATCAAGGTGTTGATGGAGCTGGTCCATCCACTGCAATCAGAACAGTTGGACTAGGAGGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACTTATGCTCAGACTGCATTTGAAGAACCTGCTTGGAGCCTTTGGCCTATTAATCCCTCCCAGGCTTCTGCAAGTGATTCAACCATCCCTTCCCCTGGGGGAAGATTGCCAGGACGAAGTGGCAATTTACATATAAGGACTGCTTCACAATCTGCAAATGATGATGTGGCAAATATACTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATCCCAGATGACTTAATATTCCAGGACTTGCAGCAGACAAATTCTGTCTCAGTCACTGTGAATAATTTTCTCCAAATAAATATAGTCTTTTTAATTCTCTTTGTTCTTCTTGGATTTGTTATATAA 1785 0.4174 MALRFITISAISTVLSFVGLQFCADFSLDTLKSDGLAGWDVMPLDNANHDAKLPLGLFTTVGLLANCMINVFILLNLCLKAMFFTELYSSETRKLVERLINYVVYKVILLFLQLIKGTFLPLIVPPTIYQAGLWSIWLAVLCSLKMFQALARDRLERLNASPSATTWTYLRVYSALIRLCLAIYRMHGSSLFLLLFFEPFSIAFETLQAILVHGFQLVDIWCNNSDCRRPKLFDSITAGSLLEYKGILIRNLGFFLDMATFFMALGHYMYIWRLHGVAFHLVDALLFLNTRALLSAIVNRIKGFIRLRIALGALHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTDMYTCPTCRKPLFAGRPENDANSTTEISSDEQLARQMSTGLGRTNSANTIPAGLHPNQTPNFVEGVPWRGAGLDAGWLHSWPNQGVDGAGPSTAIRTVGLGGVQMMMRHLASVGETYAQTAFEEPAWSLWPINPSQASASDSTIPSPGGRLPGRSGNLHIRTASQSANDDVANILAMAETVREVLPHIPDDLIFQDLQQTNSVSVTVNNFLQINIVFLILFVLLGFVI 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0473 594 MobiDBLite consensus disorder prediction 407 426 - -
Lal5g0473 594 ProSiteProfiles CUE domain profile. 539 581 IPR003892 GO:0043130
Lal5g0473 594 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 578 - -
Lal5g0473 594 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Lal5g0473 594 MobiDBLite consensus disorder prediction 407 422 - -
Lal5g0473 594 SMART ring_2 333 374 IPR001841 -
Lal5g0473 594 CDD CUE_RIN3_plant 540 577 IPR035667 -
Lal5g0473 594 SUPERFAMILY RING/U-box 320 385 - -
Lal5g0473 594 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 578 - -
Lal5g0473 594 SMART cue_7 539 580 IPR003892 GO:0043130
Lal5g0473 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 382 IPR013083 -
Lal5g0473 594 Pfam Ring finger domain 331 375 IPR001841 -
Lal5g0473 594 CDD RING-H2_synoviolin 330 375 - -
Lal5g0473 594 Pfam CUE domain 543 578 IPR003892 GO:0043130
Lal5g0473 594 Gene3D - 538 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0473 Lal-Chr5 4830289 4865575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0473 64 423 C3H Transcription Factor Family AT3G16090 27.132 2.22e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0473 K10636 - gmx:100819656 941.414