Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0456 ATGAATAGTATTAAGGAGAAATCAGAGTGTTCATCTTCTTTAGTTGTTGCTGTAGCAATAAAGGGTAACAAAAAAAGCAGATATGTGGTACAATGGGCACTTAATAAGTTTGTTCCAGAGGGAATGATTATCTTCAAGCTCATACATGTTCATGCCGTGGGAATTTTGATCCCTCTTTCACAAGCGCGTAATGATGTAGTTACTGCATTCAAAAGTGAAGTGGAGTGGCAGAGAAATCAAATGCTTCAACCTTTCAAGAAAATGTGTGAGCATAGAAAGGTTCATGTCGATCTCGTAATACTTGAATCAGATGATGTTGCAACTGCAGTAGCAGAGGAAGTAGCTAAGGGTCCGACAACCAAACTTGTCGTTGGAGCTTCATCGCACGGCATATTTACAAGTAAACATAAGGGTTTGTCTGCAAAAATCTCAGTATGCACTCCAAGATTTTGTACAGTTTATGCTGTTTCAAAAGGAAAATTGTCTATACGGCAATCGGATATGCAGATCGATGAAAGCATTATGGACGACGGTGCTAGTGAAACCAGTTTTTCCTCAAACAGCTCATCAAAGTACACTTCCACTTCTCAGACAGACTCTGCCTCAGTTGCAACCTACACTACTATGCATTCCTCTTCCCTAACAACGCAGCGATTTCAAGCGCTTTCGAGTATAAATCAGACCCTTCTGAGTACATCTTCTAGTATAACGGAATCTATCCATTCTAGAGGCCAGTCTCTCGATATTGGGAGAGAGAATACCGCTACAAGTTCTGCCAGAAACTCAGATTATGGTCTGAGCCGGGCCTCTAGTTGCAAAAGCATTATATCAGATCCCGGATCTTGGATGTATGATCAAAATTCCACTAAGGATGTACCATTAGTATCTGAACTTCTTTCGCCTAATAGGCAGGCCGATATTAACCTTGAATTGGAAAAGTTGAGAATTGAGTTAAGACATGCCCAAGGAATGCATGCAGTAGCTCAAAGTGAGAACATCGATGCATCGCGAAAGCTGAATGATTTAAGCAAGAAGCGATCAGAAGAATCCATGAAACTGAAGGAGATTATTGCGAAGGAAGAGTTGGCCCAAAAATTAGCTAACTACGGAAGAGAGAAATATGAAGCTGCAGCAAAAGAAGCTGCATATTTTAAAGATTGTGCTGAAAGAGAAGCTTCAGACAGAAAAGAAGTGGAATTGAAAGCCACTCATGCTGCCAAAGAGAAAGTAAAGCTGGAGGATGCTCTTAGTGGTTCCTCGCCCCAGTACCGAAAATTTACGTGGGATGAAATAGAGTCTGCTACTTCATCTTTCTCCGAAGAACTGAAAATTGGAATGGGAGCGTATGGAATCGTGTACAAGTGCAGTTTGTATCATACAACTGTTGCTGTTAAAGTTCTCCACTCTATTGGAAACCACAAAAACAAGCAATTTCAGCAGGAGCTAGAAATATTGAGCAAAATTCACCATCCGAACTTGCTTCTTCTTCTTGGTGCATGTGTTGATCATGGATGCCTTGTATACGAATATATGGAGAATGGTAACTTGGAGGAGAGATTACTCCGGAAAAACAGTACCGCCCCGATCCCATGGTTTGAAAGGTATCGAATAGCTTGGGAAGTTGCATCAGCTCTTGCCTTTCTTCACAGCTCAAAGCCAACACCAATCATACATCGAGATTTGAAACCAGCAAACATCTTGCTTGGTCGTAACTTAGTCAGCAAGATTGGTGATATTGGCCTTTCTACAATGCTCCATTCAGATAATTTGTCTACAATGTATAAGGACACCGAACCTGTTGGAACACTCTGCTACATAGATCCCGAGTATCAAAGGAGTGGAATAATATCTGAAAAATCTGATGTTTATGCATTTGGGATGGTTATCTTACAGTTATTGACAGCAAAACCAGCAATAGCACTTACTCATGTGGTTGAAACAGCAATTGATGGTGGGAATTTAATAGATATATTGGATCCAGAGGCAGGGACTTGGCCGTTTCAAGAAACACTCGACTTAGCTCGGTTAGGACTGAGCTGCGCAGAACTTCGGCGTAGAGACAGGCCAGATTTGAAAGATCATGTTCTTCCAACACTAGAGAGATTGAAAGAAGTGGCTGATAGAGTCCAACATTCTGCTTCAGGAGTTACTATTAAATCCAGATCTCCGAATCACTTTATCTGTCCGATTCTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGACGGATATACATATGATCGCAAAGCAATTGAAAAGTGGTTTCGGGAGAACGACAAATCACCGATGACAAACATGGCTTTACCTCATAAGAATCTTATTCCGAATTACACACTTCTGTCTGCAATTATGGAGTGGAAGTCTAGACAAATTTGA 2379 0.4115 MNSIKEKSECSSSLVVAVAIKGNKKSRYVVQWALNKFVPEGMIIFKLIHVHAVGILIPLSQARNDVVTAFKSEVEWQRNQMLQPFKKMCEHRKVHVDLVILESDDVATAVAEEVAKGPTTKLVVGASSHGIFTSKHKGLSAKISVCTPRFCTVYAVSKGKLSIRQSDMQIDESIMDDGASETSFSSNSSSKYTSTSQTDSASVATYTTMHSSSLTTQRFQALSSINQTLLSTSSSITESIHSRGQSLDIGRENTATSSARNSDYGLSRASSCKSIISDPGSWMYDQNSTKDVPLVSELLSPNRQADINLELEKLRIELRHAQGMHAVAQSENIDASRKLNDLSKKRSEESMKLKEIIAKEELAQKLANYGREKYEAAAKEAAYFKDCAEREASDRKEVELKATHAAKEKVKLEDALSGSSPQYRKFTWDEIESATSSFSEELKIGMGAYGIVYKCSLYHTTVAVKVLHSIGNHKNKQFQQELEILSKIHHPNLLLLLGACVDHGCLVYEYMENGNLEERLLRKNSTAPIPWFERYRIAWEVASALAFLHSSKPTPIIHRDLKPANILLGRNLVSKIGDIGLSTMLHSDNLSTMYKDTEPVGTLCYIDPEYQRSGIISEKSDVYAFGMVILQLLTAKPAIALTHVVETAIDGGNLIDILDPEAGTWPFQETLDLARLGLSCAELRRRDRPDLKDHVLPTLERLKEVADRVQHSASGVTIKSRSPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWFRENDKSPMTNMALPHKNLIPNYTLLSAIMEWKSRQI 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0456 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 721 792 IPR013083 -
Lal5g0456 792 Gene3D Transferase(Phosphotransferase) domain 1 511 720 - -
Lal5g0456 792 ProSiteProfiles U-box domain profile. 721 792 IPR003613 GO:0004842|GO:0016567
Lal5g0456 792 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 134 - -
Lal5g0456 792 Gene3D Phosphorylase Kinase; domain 1 408 510 - -
Lal5g0456 792 MobiDBLite consensus disorder prediction 242 265 - -
Lal5g0456 792 CDD STK_N 15 159 - -
Lal5g0456 792 Pfam U-box domain 723 789 IPR003613 GO:0004842|GO:0016567
Lal5g0456 792 SUPERFAMILY RING/U-box 722 790 - -
Lal5g0456 792 Coils Coil 311 331 - -
Lal5g0456 792 PANTHER OS02G0152300 PROTEIN 11 788 - -
Lal5g0456 792 Pfam Protein tyrosine and serine/threonine kinase 442 637 IPR001245 GO:0004672|GO:0006468
Lal5g0456 792 SMART serkin_6 438 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0456 792 Gene3D HUPs 8 136 IPR014729 -
Lal5g0456 792 SMART Ubox_2 725 787 IPR003613 GO:0004842|GO:0016567
Lal5g0456 792 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 11 788 - -
Lal5g0456 792 CDD RING-Ubox_WDSUB1_like 726 766 - -
Lal5g0456 792 MobiDBLite consensus disorder prediction 176 197 - -
Lal5g0456 792 ProSitePatterns Protein kinases ATP-binding region signature. 444 465 IPR017441 GO:0005524
Lal5g0456 792 ProSiteProfiles Protein kinase domain profile. 438 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0456 792 SUPERFAMILY Protein kinase-like (PK-like) 419 693 IPR011009 -
Lal5g0456 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 556 568 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0456 Lal-Chr5 4660736 4669772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0456 13 789 U-box Gene Family AT4G25160 51.220 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lal5g0456 PK_Tyr_Ser-Thr 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0456 - - gsj:114409387 1203.73