Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0440 ATGGCTTCCTCATCAAGCAGCGGTTTAACTTTCAAGCTTCACCCTTTAGTTATCGTCAACATCTCAGACCATTACACAAGGGTTAAGTCTCAGATCAACCCACTAATCGCACCTCACAATACCTCCAACGGCGGCGACGCCGTCGCTTCTTCCGTTCCGCCGCGAGTCTATGGCTGCGTCATAGGGGTTCAGAAGGGTCGCACCGTTGAAATATTTAATAGCTTTGAGCTTCTCTATGATCCTTCAACTAATTCGCTTGATCGTCCGTTTCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTTTTCCCACACTTCTACATACTGGGATGGTATTCAACTGGGAGTGATGCAGAAGAACCAGATATGCTTATTCACAAAGCTTTGATGGATATCAATGAAAGTCCGGTTTATCTTCTTCTCAATCCTTCAATCAATCATTCTCAGAAGGATCTCCCAGTCAGTATTTTCGAAAGTGAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGTTATACTATTGAGACTGTTGAAGCAGAACGGATCTCTGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCTGCTACACAATTGGCTGCTCACCTTACTGGTATACACAGTGCTATCAAAATGCTTCATAGTAGAATTAAGGTGTTACATCACTATCTTCTTGCAATGCAAAAAGGTGATGTTCCTTGTGAGAATTCACTATTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGAAAATTTCAAGATGATTTCTTAATGGAATACAATGACACCTTATTGATTAGTTACCTTGCCATGCTGACCAACTGCTCAAGTGCTACAAATGAACTGGTGGACAAATTCAATACTGCATATGACAGGCATAGCAGAAGGGGTGGACGAACTGCTTTTATGTAA 948 0.4198 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQINPLIAPHNTSNGGDAVASSVPPRVYGCVIGVQKGRTVEIFNSFELLYDPSTNSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEEPDMLIHKALMDINESPVYLLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSATNELVDKFNTAYDRHSRRGGRTAFM 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0440 315 Gene3D Cytidine Deaminase, domain 2 1 196 - -
Lal5g0440 315 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 315 - -
Lal5g0440 315 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 315 - -
Lal5g0440 315 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 134 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lal5g0440 315 Pfam Maintenance of mitochondrial structure and function 182 296 IPR024969 -
Lal5g0440 315 ProSiteProfiles MPN domain profile. 11 162 IPR037518 -
Lal5g0440 315 SMART pad1_6 10 161 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lal5g0440 315 CDD MPN_CSN6 9 311 IPR033859 GO:0000338|GO:0008180
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0440 Lal-Chr5 4403570 4412319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0440 2 266 Eukaryotic Initiation Factors Gene Family AT2G39990 22.963 1.47e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0440 K12179 - gmx:100797079 580.867