Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0439 ATGGCTGGGATTGATGATAATGTCACGCTAGTTGGCGATTGGGGTCCTCCGAGTCCGAGCCCGAGAACCCTTTTTTCTAGAATGCTAGGTGAAGAGAATGTAACGAAATCAATCTCAGACCCTCTAGGAAGTGGTAGAACAGGGTTTATGTTTCCGGGGAATCATGAACAGTCTGAGGCAGGGAAAGGAGACATAAAAGATAGCTCACAAGATGGTGATTCTGGTGACCAATTGACCTACTCGACGTTTCTGTCCGACCAGAAATCAAATTCGAGAGGAGGTCTTGTTGAAAGGATGGCTGCTAGAGCTGGGTTTAATGCTCCGAGGTTGAATACAGAAAGCATTAGATCTACTGATCTTACACTTAATTCTGATATTCAGTCTCCTTACTTGACCATACCACCAGGTCTCAGTCCCACTACACTTTTGGAATCTCCGGTGTTCCTTGCAAACACGTTGGCAGAGCCATCTCCAACAACTGGAAAGTTTCCGTTCATCTCAAATGGCAATATCCGGTACTCGGAATTATCATCCGATGCCCCTGAAAAATCTAAAGAAAACCTTGATGATTTCTATGCATCATCCTTTGCTTTCAAGCCTGCTACAGATTCGGACTCGTCATTTTATTATGGTGCTGCAAGGAAAGTAAGTCCAACTACAGTTCCTCAACAATCTGTTCCTGGTATTGAGGCCTCAGTTCAGTCAGAAAATTCTTTCCAATCTCAAAGTGTTGATGCACCCAAGGTTCAAACTGAGAACGAAAGCAGCCTCCATCATCAGCCAGACTTTATCGAGTCGCCACCTCAAAACGATAATGGAGTTAAATCTTTCTCAGGTGATCAAAGGGCATTTAATACTGTTGGTGGTAGCATTGAGCATTCCGCACCACCTGAAGAGCAAGCAGATGAAGTGGGAGATCAAAGAGGGAATGGAGACTCAACGGTTGCTGGTGGTACACCAGCTGAAGATGGATATAACTGGAGAAAATATGGTCAAAAGCAAGTTAAGGGCAGCGAATATCCGCGAAGTTACTATAAGTGTACACATCCAAATTGTCTGGTTAGGAAGAAAGTGGAACGGTCTCACGAGGGCCACATGACAGAGATTATCTATAAGGGAGCACACAACCATCCCAAACCAACTCTAAATCGTCGGTCCACCATGGGGTCAGCCAACCCTAATACGGACATGCAATTAGACAATCCTGAACAAGTTGAACCACAGAATGGTGATGATGGTGACCGGGGCTGGGCTAATGTACACAAGGGAGTTATAGCTGGAGCGGCTAATTGGAAGCATGACAACCCTGAAGGGACATCTTCAGCATCTATTGGCCCTGAATACTGCAACCACTCCACCAATTTGCAGACACAGAACGGTACTCACATTGATTCTGGAGATGCATTGGATGCCTCTTCTACTTTTTCTAATGAAGAAGATGAAGATGATCGAGGCACTCATGGTAGTGTCTCATTAGGTTATGATGGGGAAGGAGATGAATCTGAGTCTAAAAGAAGGAAACTGGAATCTTATGCAACAGAGCTGAGTGGAGCTACAAGAGCTATTCGTGAGCCTAGAGTTGTTGTACAGACTACCAGTGAAGTAGATATCCTCGATGATGGCTACCGATGGCGAAAGTATGGGCAAAAAGTTGTTAAAGGAAATCCCAATCCTAGGAGTTACTACAAGTGCACCAGCGCTGGCTGCACGGTGCGGAAGCATGTCGAGAGAGCATCACATGACCTCAAATCTGTGATCACTACTTATGAGGGAAAGCACAATCACGACGTTCCTGCTGCTCGTGCTAGCAGCCACGTCAATGCTGCCGCATCTAACTCTGTTCCTGGGCAAGGTCATGTTCATAGACCTGAATCATCACAAATTCACAATGGAATTGGAAGGCTTGAGAGGCCTTCGATGGGCTCATTCAACTTACCTAGGAGCCAGCAGCTAGGACCTTCCCATGGCTTTTCCTTCGGTATGAATCATCAACCTATGCTCTCAAATCTAGCAATGCCAGGATTCGGACCAGGGCAAGGAAAACATCCTGGTATGCCGGTTCATCCGTTCTTGGCACAGCAACAACAGCACCCTACGGCAAACGAAATGGGTTTTATGTTACCAAAGGGAGAACCAAATGTGGAACCTATTCCTGAACGTGGCTCATCACTATATCAAGAAATTATGAATCACATGTCTCTTGGACCTCATATGTAA 2217 0.4556 MAGIDDNVTLVGDWGPPSPSPRTLFSRMLGEENVTKSISDPLGSGRTGFMFPGNHEQSEAGKGDIKDSSQDGDSGDQLTYSTFLSDQKSNSRGGLVERMAARAGFNAPRLNTESIRSTDLTLNSDIQSPYLTIPPGLSPTTLLESPVFLANTLAEPSPTTGKFPFISNGNIRYSELSSDAPEKSKENLDDFYASSFAFKPATDSDSSFYYGAARKVSPTTVPQQSVPGIEASVQSENSFQSQSVDAPKVQTENESSLHHQPDFIESPPQNDNGVKSFSGDQRAFNTVGGSIEHSAPPEEQADEVGDQRGNGDSTVAGGTPAEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVRKKVERSHEGHMTEIIYKGAHNHPKPTLNRRSTMGSANPNTDMQLDNPEQVEPQNGDDGDRGWANVHKGVIAGAANWKHDNPEGTSSASIGPEYCNHSTNLQTQNGTHIDSGDALDASSTFSNEEDEDDRGTHGSVSLGYDGEGDESESKRRKLESYATELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNAAASNSVPGQGHVHRPESSQIHNGIGRLERPSMGSFNLPRSQQLGPSHGFSFGMNHQPMLSNLAMPGFGPGQGKHPGMPVHPFLAQQQQHPTANEMGFMLPKGEPNVEPIPERGSSLYQEIMNHMSLGPHM 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0439 738 Pfam WRKY DNA -binding domain 322 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g0439 738 Pfam WRKY DNA -binding domain 539 595 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g0439 738 Gene3D WRKY domain 525 591 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g0439 738 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 102 627 - -
Lal5g0439 738 ProSiteProfiles WRKY domain profile. 533 598 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g0439 738 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 102 627 IPR044810 GO:0003700
Lal5g0439 738 MobiDBLite consensus disorder prediction 231 329 - -
Lal5g0439 738 MobiDBLite consensus disorder prediction 434 473 - -
Lal5g0439 738 MobiDBLite consensus disorder prediction 1 92 - -
Lal5g0439 738 MobiDBLite consensus disorder prediction 380 405 - -
Lal5g0439 738 Gene3D WRKY domain 313 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g0439 738 ProSiteProfiles WRKY domain profile. 316 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g0439 738 MobiDBLite consensus disorder prediction 373 508 - -
Lal5g0439 738 SUPERFAMILY WRKY DNA-binding domain 319 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g0439 738 SUPERFAMILY WRKY DNA-binding domain 530 598 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g0439 738 MobiDBLite consensus disorder prediction 72 92 - -
Lal5g0439 738 MobiDBLite consensus disorder prediction 231 288 - -
Lal5g0439 738 SMART WRKY_cls 538 597 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g0439 738 SMART WRKY_cls 321 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0439 Lal-Chr5 4390777 4394845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0439 1 732 WRKY Transcription Factor Family AT5G56270 51.184 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal5g0439 WRKY 3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0439 K18835 - gmx:100127395 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0439 5 4390777 4394845 Lal5g0439 5 4390777 4394845 ECH
Lal5g0439 5 4390777 4394845 Lal3g1226 3 17771119 17775712 LSH