Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0432 ATGACAACTACTGCTTCAGAAGAAGATTCTACAAAACAGATTGTGCTTTTTCAGAATCAGAGTGAGGGACCAAATGGGAATTTCACCAACAACCCTTATCCTATGCCTACAGCCCTATACGATGATCTTGTCCGTGATGGAATCCTCTTCTTGGAAAAGCTTCAATCTTTTCACAACTCATTTGGAACTAAATTTAAGGTTCCAACTATAGGAGGAAAGCCACTAGATCTATATCGCCTTTTCCTTGAAGTAACATCCCGGGGTGGTCTTGAAAAGGCATTCATACATATTTCTCTTCTAATTGTTAAAAATTATAGTTCTCTTATGTCGCAAAACATATTCGTGATTGAAGATCGTAAATGGAGGGAAGTGGTTATGGTCTTTAACTTTCGAGATACCATAACGAGCGCATCGTTTATGGTGCGTAGATACTATCTATCATTGCTTTACCACTTTGAGCAGGTGTATTACTTTCGGAAGCAAGTTCCTCCTTCCTTGACCCCCGATCCCTTGAATAGGAGCCTCGTCAATTACTCTGCAACAATTAGGGAAGGTGGCACTATGAATGGTTTATCTGATCAGGTTACGCAGCTTGGTTCAGTGGTGCTTGGAACAATTGATAGTAAATTTGATGGTGGATATGTAGTTACAGTGAATCTTGGTTCGGAACAGCTGAAGGGTATCCTGTATCATGATCCTACAAATGTGTCCTGGAGTTCTTATACTGAAAGGGTGCTGAGTTCTCAGTACAGAAAGAGATCGAGATTGGCATTACGAGATCCATCTCAGCCTAAGTCAAACAGAAGTGGTTACAATTTCTTCTTTGCCGAGAATTATGCTAGGCTAAAGCCATCATTCCATGGACAAGAGAGGGAAATTAGTAAGAGGATTGGGTTTCTGTGGAGCAATCTGACAGATGCCGAAAGACAGTCTCTAACATGCCCAATGAAGGGTCTTGATATTAAGAAAGACATAACTATAACAATGGCTACATTTGTTGCAGTGAGCAATAATGGCTTAGTTGTTTTGCCTGTTACAAAATATTACTTGTTAGAGAAAACATTTTATGTTAAGGTTTATCAGGAGAAGGGTCTAAAAGACAAAGAAAGATATAGGAGAGAAATGCTCAAATTCAAATCCAATAACTCTTCTCCATAG 1158 0.3938 MTTTASEEDSTKQIVLFQNQSEGPNGNFTNNPYPMPTALYDDLVRDGILFLEKLQSFHNSFGTKFKVPTIGGKPLDLYRLFLEVTSRGGLEKAFIHISLLIVKNYSSLMSQNIFVIEDRKWREVVMVFNFRDTITSASFMVRRYYLSLLYHFEQVYYFRKQVPPSLTPDPLNRSLVNYSATIREGGTMNGLSDQVTQLGSVVLGTIDSKFDGGYVVTVNLGSEQLKGILYHDPTNVSWSSYTERVLSSQYRKRSRLALRDPSQPKSNRSGYNFFFAENYARLKPSFHGQEREISKRIGFLWSNLTDAERQSLTCPMKGLDIKKDITITMATFVAVSNNGLVVLPVTKYYLLEKTFYVKVYQEKGLKDKERYRREMLKFKSNNSSP 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0432 385 Gene3D High mobility group box domain 247 384 IPR036910 -
Lal5g0432 385 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 25 92 - -
Lal5g0432 385 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 358 384 - -
Lal5g0432 385 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 115 311 - -
Lal5g0432 385 SUPERFAMILY ARID-like 48 166 IPR036431 GO:0003677
Lal5g0432 385 SMART bright_3 45 158 IPR001606 GO:0003677
Lal5g0432 385 SMART ARID_2 41 153 - -
Lal5g0432 385 Gene3D - 41 167 IPR036431 GO:0003677
Lal5g0432 385 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 115 311 - -
Lal5g0432 385 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 25 92 - -
Lal5g0432 385 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 358 384 - -
Lal5g0432 385 Pfam ARID/BRIGHT DNA binding domain 50 153 IPR001606 GO:0003677
Lal5g0432 385 CDD ARID_HMGB9-like 46 153 IPR045303 GO:0003677
Lal5g0432 385 CDD HMGB-UBF_HMG-box 264 375 - -
Lal5g0432 385 ProSiteProfiles ARID domain profile. 44 157 IPR001606 GO:0003677
Lal5g0432 385 SUPERFAMILY HMG-box 247 310 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0432 Lal-Chr5 4307753 4314666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0432 24 384 ARID Transcription Factor Family AT3G13350 42.935 9.24e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal5g0432 ARID 3.1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0432 5 4307753 4314666 Lal5g0432 5 4307753 4314666 ECH