Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0403 ATGGGAAATTATTGTGGAAAACCAGTTGCTCATGTATCTTCTAATTTTACTGGAAGTAAAAACAAGAGTGTGAATAAGACAAAGCAGGATTTGTTTTCTTCTCATCAAAAAGCAGCTTTGCAAACTTCACAATCAAATGTTAACAAATCTATCTCCAATAACCTTAAGTCCTTTAGCTTCAATGATCTAAAGGAGGCTACAAAGAACTTCAGGAGAGAAAATTTAATCGGAGAAGGAGGGTTTGGGTATGTATTCAAGGGATGGATCGACGAGACCACTTATGCTCCAACAAAGCCGGGGAGTGGAATGGTAGTGGCCATTAAGAATCTTAAGCCAGAAAGCTTTCAAGGCCACAAAGAATGGCTTACCGAAATCAATTATCTCGGGCAGCTTCAACATGAAAATCTGGTGAAACTTATTGGTTATTGTTTGGATGGTAAAAACAGGCTTCTAGTTTATGAGTTTATGCAAAAAGGAAGCTTGGAGAATCACTTATTCAGAAAAGGTGTTCAACCGATAGCCTGGACTACTAGGATCAATATCGCGATTGGTGTAGCAAGAGGAGTAACATTCTTACATTCACTAAATGCAAATGTTATCTTTCGCGATTTAAAGGCTTCGAATATCCTACTTGATTCAGATTTCAATGCAAAGCTTTCTGATTTTGGTTTGGCAAGAGATGGTCCTACAGGAGATAACACACATGTTTCAACAAGAGTTATTGGAACTCAAGGTTATGCTGCACCAGAGTATGTTGCTACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTTTGGTGTTGTATTGTTAGAGTTACTAACCGGAAGGCGTGCAGTAGAAGACAGCCGACCCGGATTTTCGGACGAAACTTTGGTGGATTGGGCTAAGCCTTTTCTGAGTGATAGCAGAAGAGTTTTGAGAATCATGGATACTAGGTTGGGTGGTCAATACTCTAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCATTGCAATGCCTAGGCACAGATCCAAAATTTAGACCACCTATGGTAGATGTTCTAGCAGCATTGGAAGGACTCAATTCTTCAAATACAATGCCACCAATGGCACAAAAATCAGGAACTGAGATTCATGCAACCAAACATTCTGGTCATTCACACAATTGA 1149 0.4012 MGNYCGKPVAHVSSNFTGSKNKSVNKTKQDLFSSHQKAALQTSQSNVNKSISNNLKSFSFNDLKEATKNFRRENLIGEGGFGYVFKGWIDETTYAPTKPGSGMVVAIKNLKPESFQGHKEWLTEINYLGQLQHENLVKLIGYCLDGKNRLLVYEFMQKGSLENHLFRKGVQPIAWTTRINIAIGVARGVTFLHSLNANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRAVEDSRPGFSDETLVDWAKPFLSDSRRVLRIMDTRLGGQYSKKGAQAAAALALQCLGTDPKFRPPMVDVLAALEGLNSSNTMPPMAQKSGTEIHATKHSGHSHN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0403 382 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Lal5g0403 382 Gene3D Phosphorylase Kinase; domain 1 43 155 - -
Lal5g0403 382 MobiDBLite consensus disorder prediction 363 382 - -
Lal5g0403 382 SUPERFAMILY Protein kinase-like (PK-like) 44 360 IPR011009 -
Lal5g0403 382 PANTHER TYROSINE KINASE FAMILY PROTEIN 18 379 - -
Lal5g0403 382 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
Lal5g0403 382 Gene3D Transferase(Phosphotransferase) domain 1 156 376 - -
Lal5g0403 382 CDD STKc_IRAK 76 354 - -
Lal5g0403 382 PANTHER OS01G0588500 PROTEIN-RELATED 18 379 - -
Lal5g0403 382 SMART serkin_6 70 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0403 382 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0403 Lal-Chr5 3990144 3994033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0403 41 351 Glycoside Hydrolase AT3G07070 50.949 2.73e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal5g0403 PK_Tyr_Ser-Thr 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0403 - - gmx:100800654 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0403 5 3990144 3994033 Lal18g1474 18 16705106 16709046 PCT
Lal18g1474 18 16705106 16709046 Lal5g0403 5 3990144 3994033 PCT