Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0385 ATGGAAGAAAGGCTAGGCCAAAACTCAGTTCCTCCGTCACGTACTATCGATAAGTATAAGATTCTGGATATTAAACCGATACGTAGTATGATACCTGTGTTCTCCATGTCTCCTCAAGGTCCAGCCTCTGGGGAGTATCCTTCAGGGTTTAATCCATTTTTCCCATTTGGTGGACCTCAGCAAACACCGGCAAGGGTTGTTGCCACGCCAGCTCCATTACGTGCGTATAGGGCTGGAGAGACTGATGGTTTCGACGATCATGCAGCGTCACATTCCCGTGGCTCCCAATCATTGAAAAGGAAGCATGCTAAGAGAACTCCGGTGGTACTTACTGATTCAGGTTTTTTAGTTGGTATTACCCCAGATCTAAGAGAAGATGGCAACCGTGATGTGGTTAATCTTATACTCATGACATTTGATGCATTTCGAAGGAGGCTTTGCCAACTTGAAGATGCCAAGGAATTGAGCACTGGTTCAATCAAGCGTGCAGATTTAAAAGCTTGCAATACTTTGATGATGAAAGGGATTCGTACAAATATGAGGAAGAGAGTAGGAGCCGTGCCCGGGGTTGAGATTGGGGACATTTTCTTCTTCCGAATGGAATTATGTATTGTCGGTTTGCATTCTCAATCCATGGGTGGAATTGATGCCATGCATGTCAGAAGTGAATCTGAGGAGGAAACTCTGGCCATAAGCATTGTTTCATCAGGGGAGTACGATGATGAGGCAGAGGATAATGATGTTATAATTTACACTGGCCAGGGTGGGAACTTCAACAAGAAAGATAAGCATGTGAAGGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGACAGAAGTTCACGACAACACAATGAAATAAGAGTCATCAGAGGTATAAGAGAGGGTGTGAATCAGAATTCAAAAATCTATGTCTATGATGGTTTGTATAAAATCCAAGATTCATGGATGGATAGAACAAAAAGTGGTGGCGGTGGCGTATTTAAGTATAAGTTGGTGAAAGTGCCTGGTCAGCCTAGTGCCTTTGCTGTTTGGAAATCAGTTCAGAAGTGGAAGTCAGGCTTCCCTTCAAGGACTGGACTTATTCTTGCCGACCTCTCATCGGGAGCTGAGAGTATTCCTGTAACACTTGTCAATGATGTTGATAATGAGAAAGCGCCTGCTTATTTCACTTATTTCCATTCTCTTAGACATCCAAAATCATTCAGTTTAATGCAGCCTTCACACGGCTGCAACTGTACTAAAGCATGTGTCCCTGGGGATGTAAACTGCTCTTGCATTAGAAAAAATGGAGACTATTTTCCGTATTCTGGCAATGGCATTCTGGTGAGTCGGAAGCAATTGGTTTATGAATGTGGGCCCAATTGTCAATGTTTTCCTAACTGCAAAAATCGAGCATCCCAGACTGGTTTGAAGCACCACATGGAAGTGTTCAAAACAAAGGATAGAGGTTGGGGTCTTCGATCACTCGACCCTATTCGTTCTGGTTCTTTTATTTGTGAATATGCAGGAGAAGTTATTGACAAAGCCAAGTTAAGTCAGATGGTGAGGGAAAGAGATGATGACTATGTTTTTGATACAACTCGTATTTTTGATACATTCAAGTGGAACTATGAGCCTAGGTTACTCGAAGAAGAGAGTACAAATGACTCTAGTGAGGATTACGCTATACCGTATCCTCTAATTATAAGTGCCAAGAATGTCGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAACCTGTCATATATGAAGAAAACAATCAATCCTTCCTACATGTTGCATTTTTTGCACTCAGGCACATTCCCCCGTTGACAGAGTTCACATATGATTATGGATTTTCTCGCGACGAGGGTAGCAATGCACCCAAAGGGAGAAATAAATGCTTTTGTGGATCGCCAAAATGCCGTGGTTCTTATGGTTGA 1944 0.4259 MEERLGQNSVPPSRTIDKYKILDIKPIRSMIPVFSMSPQGPASGEYPSGFNPFFPFGGPQQTPARVVATPAPLRAYRAGETDGFDDHAASHSRGSQSLKRKHAKRTPVVLTDSGFLVGITPDLREDGNRDVVNLILMTFDAFRRRLCQLEDAKELSTGSIKRADLKACNTLMMKGIRTNMRKRVGAVPGVEIGDIFFFRMELCIVGLHSQSMGGIDAMHVRSESEEETLAISIVSSGEYDDEAEDNDVIIYTGQGGNFNKKDKHVKDQKLQRGNLALDRSSRQHNEIRVIRGIREGVNQNSKIYVYDGLYKIQDSWMDRTKSGGGGVFKYKLVKVPGQPSAFAVWKSVQKWKSGFPSRTGLILADLSSGAESIPVTLVNDVDNEKAPAYFTYFHSLRHPKSFSLMQPSHGCNCTKACVPGDVNCSCIRKNGDYFPYSGNGILVSRKQLVYECGPNCQCFPNCKNRASQTGLKHHMEVFKTKDRGWGLRSLDPIRSGSFICEYAGEVIDKAKLSQMVRERDDDYVFDTTRIFDTFKWNYEPRLLEEESTNDSSEDYAIPYPLIISAKNVGNVARFMNHSCSPNVFWQPVIYEENNQSFLHVAFFALRHIPPLTEFTYDYGFSRDEGSNAPKGRNKCFCGSPKCRGSYG 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0385 647 Gene3D SET domain 356 646 IPR046341 -
Lal5g0385 647 ProSiteProfiles YDG domain profile. 185 334 IPR003105 -
Lal5g0385 647 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 645 - -
Lal5g0385 647 Pfam SAD/SRA domain 184 338 IPR003105 -
Lal5g0385 647 SUPERFAMILY SET domain 372 644 IPR046341 -
Lal5g0385 647 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 647 IPR025794 GO:0016571
Lal5g0385 647 Pfam SET domain 484 619 IPR001214 GO:0005515
Lal5g0385 647 SUPERFAMILY PUA domain-like 167 355 IPR015947 -
Lal5g0385 647 SMART G9a_1 180 338 IPR003105 -
Lal5g0385 647 MobiDBLite consensus disorder prediction 81 103 - -
Lal5g0385 647 ProSiteProfiles Pre-SET domain profile. 409 470 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal5g0385 647 SMART preset_2 363 457 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal5g0385 647 Gene3D - 167 353 IPR036987 -
Lal5g0385 647 ProSiteProfiles Post-SET domain profile. 631 647 IPR003616 -
Lal5g0385 647 ProSiteProfiles SET domain profile. 473 619 IPR001214 GO:0005515
Lal5g0385 647 Pfam Pre-SET motif 367 465 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal5g0385 647 SMART set_7 473 625 IPR001214 GO:0005515
Lal5g0385 647 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0385 Lal-Chr5 3892369 3894312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0385 1 647 Su(var)3-9 homologs AT1G73100 51.528 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal5g0385 SAD_SRA 5.6e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0385 K24405 - gmx:100812173 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0385 5 3892369 3894312 Lal3g1273 3 18433599 18436486 LSH