Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0384 ATGGTTCGGAAGAAGAAAGACAGTGATAGCGACGAAGACGATATCTTCTACTATCGTTACTGTTCTTCATCTTCTTCAAATCAAAACCTAAACCTAAATCAAAACCCTTCTCAATCTCATTCTCAATCTCAAAATAATAACAACAAAGGTTCATCAGTGTTAGCTCCTTCTAAATCCACCGTTTACGTTTCCAACATCGATTTCTCTCTCACAAATTCCGATCTCCACACTCTCTTCTCCACCTTCGGCCGCATCGCTCGCGTCACCGTCCTCAAAGACCGCCACACCCGCCAGAGCCGCGGCGTCGCTTTCATCCAATTCGTCTCCCGCGACGACGCTTGCACCGCCGCTTCCCAAATGCATCATAAGATTCTCAATGGACGCACCCTCACTGCTTCCATTGCTTCCGATAATGGACGCGCCCCTGAGTTTATCAAGAAAAGGGTTTATTCTGATACGGGTCGTTGTTTTGAGTGTGGGGAGTCGGGTCATTTGTCGTATGATTGTCCTAGGAATCAGTTGGGTCCTCGGGAGCGTCCTGCGCCGAAGCGCGTGAGGCGAGGTGGGGGAAGGGGTGGTGGTAGTGGTGGTGGTGGTGGTGGTGGGAGAGGGTTTCGGCGAAATGATGATGATGATGATGATGAGGAAGAAGAGGAGGAGGGTGGTCGCGGTGGGGAGCGGTTTGAGGATGATAATTGGGCTTCTGTTGTGGATGATAAGGCGGATGAGAGATTGTTGGAGAGGAATGAGAAGGTTGTCGTGAAGAAGGGGAAGAAAATTGGGTACTTTAGTGATGAGAGTGGCGATGAAGATGATGAGGTCAAAGAATTTTGCCAGTTAGGAAAGTGTCTGCTTGGGGAATTCAACACCTCACAGTCTTGGAGTCTGGTGAATGTCATTGCAATCTACAGCATGAATTTAAACTAG 927 0.4865 MVRKKKDSDSDEDDIFYYRYCSSSSSNQNLNLNQNPSQSHSQSQNNNNKGSSVLAPSKSTVYVSNIDFSLTNSDLHTLFSTFGRIARVTVLKDRHTRQSRGVAFIQFVSRDDACTAASQMHHKILNGRTLTASIASDNGRAPEFIKKRVYSDTGRCFECGESGHLSYDCPRNQLGPRERPAPKRVRRGGGRGGGSGGGGGGGRGFRRNDDDDDDEEEEEEGGRGGERFEDDNWASVVDDKADERLLERNEKVVVKKGKKIGYFSDESGDEDDEVKEFCQLGKCLLGEFNTSQSWSLVNVIAIYSMNLN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0384 308 MobiDBLite consensus disorder prediction 168 233 - -
Lal5g0384 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 137 IPR000504 GO:0003723
Lal5g0384 308 MobiDBLite consensus disorder prediction 210 224 - -
Lal5g0384 308 SMART c2hcfinal6 155 171 IPR001878 GO:0003676|GO:0008270
Lal5g0384 308 Gene3D - 146 181 - -
Lal5g0384 308 MobiDBLite consensus disorder prediction 27 53 - -
Lal5g0384 308 Gene3D - 26 232 IPR012677 -
Lal5g0384 308 Pfam Zinc knuckle 155 170 IPR001878 GO:0003676|GO:0008270
Lal5g0384 308 ProSiteProfiles Zinc finger CCHC-type profile. 155 171 IPR001878 GO:0003676|GO:0008270
Lal5g0384 308 SMART rrm1_1 60 133 IPR000504 GO:0003723
Lal5g0384 308 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 8 270 IPR044598 GO:0000398|GO:0005689
Lal5g0384 308 CDD RRM_ZCRB1 58 135 IPR034219 -
Lal5g0384 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 130 IPR000504 GO:0003723
Lal5g0384 308 SUPERFAMILY Retrovirus zinc finger-like domains 145 172 IPR036875 GO:0003676|GO:0008270
Lal5g0384 308 SUPERFAMILY RNA-binding domain, RBD 38 141 IPR035979 GO:0003676
Lal5g0384 308 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 8 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0384 Lal-Chr5 3883611 3887380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0384 59 135 Eukaryotic Initiation Factors Gene Family AT4G34110 32.468 5.22e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0384 K13154 - gmx:100814914 286.189