Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0380 ATGGGGTTTGAACCATTGATTTGGTATTGCCAACCAGAAGAAAACAACATTTGGAGTAAAACAGTGAATAGTGCTTTTGGTTCCTATACACCTTGTGCTATTAACACTTTTGTTATCTCCACCTCCAATTTGATTCTTATGGGTCTGTGCTTATATCGAATGTGGCTTATCGTTAGAAATGCCAAAGCACAGAGGTTTTGTTTGAGCTCAAATTACTATAATTATGTATTAGCTATATTGGCTGCTTATTGTGCCGCTCAACCTTTATTGAGATTGTTAAATGGAATATCAGCCTTCAACCTGAATGGAGAGACTGATTTTTATCCGTATGAGATAATAGCTCTGATCATTGAAACACTTACTTGGTGCTCAATGATAATTCTACTTCTATTGGAAACCAAGGTTTATATCCGGCAATTTAGATGGTTTGTGCGGTTCGGAGTTATTTATGTTTTGGTGGGGGATGCAGTAATGCTTAACCTTCTACTGTCAGTGAAAGATTACTGCAGCAGATCTGCACTGTTTCTGTACCTTAGCACTGTTATCTGCCAAGCATTGTTTGGTAGTTTACTTTTTGCTTACATTCCTAATTTGGTTCCTTATTCTGGCTGTCTAACAACACAAGCTGATGTTCCTGACAATGCTGAATATGAACCACTTTCTGGAGCAGACCAAGTTTGCCCTGAGATGCAGGCCAGTCTATTCTCTAGGATAACCTTTGGGTGGATAACTCCACTCATGAAACAAGGCTACAGAAAACCCATCACTGAAAAGGATGTTTGGAAGTTAGACAAATTGGACCAAGCAGAGACATTAACCGAAAAGTTTCAAAGGTGTTGGATGTTAGAATTGCAAAGCTCTAATCCTTGGCTTTTAAAAGCTTTGAACAATAGCCTAGGGAAAAGGTTTTGGTGGGGAGGCATCTATAAGATTGGTAATGACCTTTCTCAGTTTGTGGGGCCTATTTTGCTGAACCATCTTCTAACTTCAATGCAAAATGGAGATCCATCTTGGATTGGTTACATCTACGCCTTCTCTATATTTGTTGGAGTGTCAGTTGGTGTTCTATGTGAAGCACAATATTTCCAGAATGTTATGCGAGTTGGTTTTCAACTTAGATCAACTTTGGTGGCTGCTATATATAGAAAATCTTTACGGCTAACTAATGAAGGTCGAAAGAAGTTTGCGTCTGGGAAGCTTATGAATATGATAACAACAGATGCAAATTCACTTCAGCAATGCACCATGATCTTCAAGGGAAATAACAAGAAAACAAGGGAAAGAGTCCTCCTTGAATTTTTTTCTACAGGAATGATGGAAGAGGATGCTATGAAGGGCATAAACCTTGAAGCAAATATGTCAACAACTTCATGCACTGTGGTCAGCGCCATTCCGTATCTCAATAGCTATGGTTCTCCTATACCAGCAACTTGGTGTTGCTTCACTTCTTGGATCACTAATGATAGTTCTCCTTATCCCACTTCAGGCAAGTGTTGTCTCTGCTTTCTAGCGTTTGCACGTACACATGTGATTAGCAAAATGAGAAAACTGACTAAGGAAGGATTGCAACAGACAGATAAAAGGGTTGGCCTCATGAATGAAATTCTGGCTGCCATGGATACCGTAAAGTGTTATGCATGGGAAACAAGCTTTCAATCTAGAGTTCAAAGCATACGTCACGATGAGTTATCATGGTTCCGGAAAGCACAACTTCTATATGCTTTCAATAGTTTTATACTAAATAGCATCCCAGTTCTTGTGACAGTGACCTCATTTGGAATGTTTACTTTACTTGGTGGAGAACTAACCCCTGCAAGGGCATTTACCTCATTATCTCTATTTGCAGTTTTGCGCTTCCCTTTAAACATGCTTCCAAACTTACTAAGTCAGGTTGCAAATGCAAATGTCTCATTACAACGTTTGGAGGAACTGTTCTTAGCCGAGGAGCGAAATTTGAAACAAAATCCACCTATTGTACCAGGACTTCCAGCCATCTCAATTGAGAATGGATTCTTTTCATGGGATGCCAAGGCAGAGAAGCCCACACTATCAAATATTAATATTGAAATACCAATTGGCCGCTTAGTCGCCGTTGTTGGTGGTACTGGAGAAGGGAAAACATCACTTATTTCTGCAATGATTGGAGAGCTACCTCCTATAGCTGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCACAAATTTCATGGATTTACAATGCTACAGTTCGTGAAAATATATTATTTGGATCAGATTTTGAATACGAACGATATTGGAAGGCTATTGATGCCACTGCCTTAGAGCATGATCTGAACTTACTACCTGGACGTGATTTTACAGAGATTGGAGAAAGAGGAGTCAATATTAGTGGCGGACAAAAGCAAAGAGTTTCATTAGCTAGGGCTATATACTCAAATTCGGACGTATATATATTTGATGATCCTTTAAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGAGCTTCGGGGAAAAACCAGGGTTCTTGTCACCAACCAGCTACATTTTCTCCCTCAGGTGGATGAAATTATTGTGGTTAGCGAAGGCATAATTAAAGAGCAAGGAACCTTTGAGGAGTTATCAAAATGTGGGCTTCTATTTCAGAAACTAATGGAAAATGCAGGGAAGATGGAACAACAAACAGAAAATAATGAAAATATAGATAATGATGACAAATCTAACGTTTTAACTTTGAATGGCGAGGCAATTGTAGAGTTACCAAAAGATGCAAGCTATGAAAAGAAGGGAAAATTACGAAAATCAGTACTTATTAAGCAAGAAGAGAGGGAGACTGGTGTGGTTAGCTGGAAAGTTCTAATGAGGTACAAATCTGCACTGGGTGGACTGTGGGTGGTTTCCATAGTCTTTGCATGTTATGCATTAACAGAAGTTCTTCGAATTTCAAGTAGCACATGGTTAAGTGTTTGGACAGATCAAGATTCCAACGCAGATTATGGACCAGAATATTTTCTCTTCATCTATGCACTTTTATCATTTGGACAGGTATCTGTGACCCTTGCAAACTCTTATTGGCTGACCATTTCAAGTCTTCATGCTGCCAAAAGATTGCATGATGCAATGTTAGATAAAATACTAAGAGCTCCTATGGTATTCTTCCAAACTAATCCAGTTGGCCGTATAATCAATAGGTTTGCAAAAGACATGGGAGATATAGATACCAATGTTTTTAATTTGGTAAATATGTTTTTGGGGCAAGCCTGGCAATTACTTTCAACATTTGTTCTTATTGGTACTAGCACAGCTCGAGAGGTGAAGCGCCTGGATTCCATTACAAGATCTCCTGTTTATGCACATTTTGGAGAGGCGTTGAATGGTTTGTCAAGCATCCGTGCCTATAAAGCATATGAAAGGATGGCACACATTAATGGAAAATTCATGGACAACAACATCCGATTTACCCTTGTGAATATTAGCTCAAATCGTTGGCTCACTACAAGGTTAGAATCATTAGGAGGTCTCATGATTTGGTTGATAGCAACATTTGCTGTCTTGCAGAATGGAAGATCTGAAAACCAGGCAATGTTTGCATCTACCATGGGTCTACTTCTCAGTTATACTTTGAACATAACAACTCTTCTGAGTGGTGTCCTCAGACAAGCAAGTAGAGCTGAAAACAGTTTCAATGCCGTTGAACGGGTTGACACTTATATAGACTTAGAAACTGAGGCTCCAGGTATAATTGAGACAAACCGTCCACCACCAGGATGGCCAGCATCAGGATCAATTAAGTTTGAGGATGTTGTTCTGAGATACAGGCCTGAACTTCCTCCAGTTCTGCATGGATTGTCCTTTACTGTACCTCCAACTGAGAAGGTAGGAGTAGTTGGAAGAACTGGAGCAGGAAAATCTAGCATGCTTAATGCATTATTCCGGCTCGTGGAACTACAAAAAGGAAGAATCATCATTGATGGCTGTGATATTTCTATGTTTGGACTAGCAGATTTGCGAAAAGTTCTCACTATCATACCACAATCTCCTGTTCTTTTCTCTGGGACTGTTCGATTCAATCTTGATCCATTTAATGAACACAATGATGCTGACTTATGGGAAGCTTTAGAGAGGGCTTACTTGAAGGATGTAATAAGAAGAAATCCATTTGGTCTAGATGCTCAGGTTTCAGAGGGAGGAGACAATTTCAGTGTTGGACAAAGGCAACTGTTAAGTCTAGCTAGAGCATTGTTAAGAAGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCCGCTGTTGATGTTAGAACCGATGCTCTTATACAGAAAACGATTCGACAGGAATTTCAGTCCTGCACAATGCTTATCATTGCACACAGACTAAATACAATTATTGACTGCAATCGGATTCTGTTGCTCGATGATGGCCGGGTTCTTGAATACAGTTCACCAGAGGAACTCTTAGTAAATGAAGGAAGTGCTTTCTACAAGATGGTTCAAAGTACTGGACCTGAAAATGCTAAATATTTATGCAGCCTGGTATTTGGAAGGACAGTGAACAATTCTACTCAAGATAACAAGGGTCTGGAAAGCCATATGAGACAGTTAGCTTCTACCAATTGGGCTGCTGCTACCCAGTTTGCCATGGCTACTACCCTTTCTTCCTTACACCACCAACTTCAAGGGCCAAGTACTAAAGATAATAAAGATATCTTAGATAAAACAAAGGATGCTGTAACAACACTTCAAGAAGTTCTAGAGGGTAAGCATAATGAAGCCATAGAAGAGACACTGACTAGATACCAAGTTCCTACAGATAGATGGTGGTCCACTCTCTATAAAATTATTGAAGGTCTTGCTGTCTTGATCAGATTGCCTCCAGACAACATTCAACAATTAGAACTTGATTTTGAAGGGAAATCCTTTGACTAA 4929 0.396 MGFEPLIWYCQPEENNIWSKTVNSAFGSYTPCAINTFVISTSNLILMGLCLYRMWLIVRNAKAQRFCLSSNYYNYVLAILAAYCAAQPLLRLLNGISAFNLNGETDFYPYEIIALIIETLTWCSMIILLLLETKVYIRQFRWFVRFGVIYVLVGDAVMLNLLLSVKDYCSRSALFLYLSTVICQALFGSLLFAYIPNLVPYSGCLTTQADVPDNAEYEPLSGADQVCPEMQASLFSRITFGWITPLMKQGYRKPITEKDVWKLDKLDQAETLTEKFQRCWMLELQSSNPWLLKALNNSLGKRFWWGGIYKIGNDLSQFVGPILLNHLLTSMQNGDPSWIGYIYAFSIFVGVSVGVLCEAQYFQNVMRVGFQLRSTLVAAIYRKSLRLTNEGRKKFASGKLMNMITTDANSLQQCTMIFKGNNKKTRERVLLEFFSTGMMEEDAMKGINLEANMSTTSCTVVSAIPYLNSYGSPIPATWCCFTSWITNDSSPYPTSGKCCLCFLAFARTHVISKMRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRVQSIRHDELSWFRKAQLLYAFNSFILNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFAVLRFPLNMLPNLLSQVANANVSLQRLEELFLAEERNLKQNPPIVPGLPAISIENGFFSWDAKAEKPTLSNINIEIPIGRLVAVVGGTGEGKTSLISAMIGELPPIADGNATIRGTVAYVPQISWIYNATVRENILFGSDFEYERYWKAIDATALEHDLNLLPGRDFTEIGERGVNISGGQKQRVSLARAIYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEELRGKTRVLVTNQLHFLPQVDEIIVVSEGIIKEQGTFEELSKCGLLFQKLMENAGKMEQQTENNENIDNDDKSNVLTLNGEAIVELPKDASYEKKGKLRKSVLIKQEERETGVVSWKVLMRYKSALGGLWVVSIVFACYALTEVLRISSSTWLSVWTDQDSNADYGPEYFLFIYALLSFGQVSVTLANSYWLTISSLHAAKRLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDMGDIDTNVFNLVNMFLGQAWQLLSTFVLIGTSTAREVKRLDSITRSPVYAHFGEALNGLSSIRAYKAYERMAHINGKFMDNNIRFTLVNISSNRWLTTRLESLGGLMIWLIATFAVLQNGRSENQAMFASTMGLLLSYTLNITTLLSGVLRQASRAENSFNAVERVDTYIDLETEAPGIIETNRPPPGWPASGSIKFEDVVLRYRPELPPVLHGLSFTVPPTEKVGVVGRTGAGKSSMLNALFRLVELQKGRIIIDGCDISMFGLADLRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAYLKDVIRRNPFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLDDGRVLEYSSPEELLVNEGSAFYKMVQSTGPENAKYLCSLVFGRTVNNSTQDNKGLESHMRQLASTNWAAATQFAMATTLSSLHHQLQGPSTKDNKDILDKTKDAVTTLQEVLEGKHNEAIEETLTRYQVPTDRWWSTLYKIIEGLAVLIRLPPDNIQQLELDFEGKSFD 1642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0380 1642 SUPERFAMILY ABC transporter transmembrane region 289 415 IPR036640 GO:0005524|GO:0016021
Lal5g0380 1642 CDD ABC_6TM_ABCC_D1 305 641 IPR044746 GO:0140359
Lal5g0380 1642 Pfam ABC transporter 1282 1430 IPR003439 GO:0005524
Lal5g0380 1642 Pfam ABC transporter 683 818 IPR003439 GO:0005524
Lal5g0380 1642 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 414 - -
Lal5g0380 1642 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 499 1520 - -
Lal5g0380 1642 Gene3D ABC transporter type 1, transmembrane domain 496 648 IPR036640 GO:0005524|GO:0016021
Lal5g0380 1642 Gene3D ABC transporter type 1, transmembrane domain 1102 1246 IPR036640 GO:0005524|GO:0016021
Lal5g0380 1642 Gene3D ABC transporter type 1, transmembrane domain 285 420 IPR036640 GO:0005524|GO:0016021
Lal5g0380 1642 Gene3D ABC transporter type 1, transmembrane domain 930 1101 IPR036640 GO:0005524|GO:0016021
Lal5g0380 1642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1499 IPR027417 -
Lal5g0380 1642 ProSitePatterns ABC transporters family signature. 791 805 IPR017871 GO:0005524
Lal5g0380 1642 Gene3D - 1249 1501 IPR027417 -
Lal5g0380 1642 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 633 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g0380 1642 ProSitePatterns ABC transporters family signature. 1402 1416 IPR017871 GO:0005524
Lal5g0380 1642 SUPERFAMILY ABC transporter transmembrane region 965 1245 IPR036640 GO:0005524|GO:0016021
Lal5g0380 1642 Gene3D - 649 915 IPR027417 -
Lal5g0380 1642 CDD ABCC_MRP_domain1 665 865 - -
Lal5g0380 1642 CDD ABC_6TM_ABCC_D2 968 1240 IPR044726 GO:0140359
Lal5g0380 1642 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 665 889 IPR003439 GO:0005524
Lal5g0380 1642 Coils Coil 624 644 - -
Lal5g0380 1642 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 970 1228 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g0380 1642 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 499 1520 - -
Lal5g0380 1642 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 38 414 - -
Lal5g0380 1642 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1265 1499 IPR003439 GO:0005524
Lal5g0380 1642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 659 888 IPR027417 -
Lal5g0380 1642 Pfam ABC transporter transmembrane region 1102 1195 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g0380 1642 Pfam ABC transporter transmembrane region 969 1101 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g0380 1642 Pfam ABC transporter transmembrane region 307 413 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g0380 1642 Pfam ABC transporter transmembrane region 499 621 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g0380 1642 SUPERFAMILY ABC transporter transmembrane region 499 645 IPR036640 GO:0005524|GO:0016021
Lal5g0380 1642 CDD ABCC_MRP_domain2 1263 1483 - -
Lal5g0380 1642 SMART AAA_5 692 872 IPR003593 -
Lal5g0380 1642 SMART AAA_5 1291 1470 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0380 Lal-Chr5 3841401 3863942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0380 672 878 Calmodulin-binding Proteins AT2G36910 30.000 3.63e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0380 - - mtr:MTR_3g011820 2263.42