Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0377 ATGGCAACAAAAGGTTTTGAACCTTGTCATTCTGAATCTTCTACAAGTATGTCTGTCACCTCCAATAATGAAATAGATCATCAGGCTTATTCCAATTCAGATTCCCATATGGGGTTCGATTTTGTGAAGCTATTAAAGGATGACGATTTGATTGGTGGGTCTATGATAGAACTCGATTTATTCAATAGCAACAACGAAGTGAAAGATAAGAATATCGACGAAAATACATTAGACTCAAGGACTTTCTCGTGCAACTTTTGTAAGAGAAAATTTTCAACTTCTCAAGCTTTGGGAGGACACCAAAACGCACACAAGCAAGAGCGCGCAGTTGCAAAACGTTGCCAAAATGTCGATAATAATTATTTGGGTCTCCCTCAGTTTCCTTATTACCCTTTTACTAACCTTTCCACACAACCACCATACCCTTTGTATGGGTCCTATAATAATAGGGCACTAGGACTTGGGGTGCCTTCTTATCCTTGGACCACACCTGACTTAAGGTATGGTCCTAATGATAGTGGGTGGCCAAGCCCAATGCAAGGGATGCTAAATCAATCACTACCCCATGATAGATTGAATAGTATAGAGGGTTTGCAAGATCATGATCATGGTATTGTTCGTCCTAAACTTCACTTTGGAGATTCTCTTAGTAATGTTGCTACTATAAGTTCAAGCTCACCCGTTAAAATGACAACTATGACAAACAAGGATGATCATCATTCCAACCAAGAAGAATTAACCTCAATTCCTAAATCTTTTGTTCTTGATTTGTCACTTAAGCTTTAA 786 0.3855 MATKGFEPCHSESSTSMSVTSNNEIDHQAYSNSDSHMGFDFVKLLKDDDLIGGSMIELDLFNSNNEVKDKNIDENTLDSRTFSCNFCKRKFSTSQALGGHQNAHKQERAVAKRCQNVDNNYLGLPQFPYYPFTNLSTQPPYPLYGSYNNRALGLGVPSYPWTTPDLRYGPNDSGWPSPMQGMLNQSLPHDRLNSIEGLQDHDHGIVRPKLHFGDSLSNVATISSSSPVKMTTMTNKDDHHSNQEELTSIPKSFVLDLSLKL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0377 261 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Lal5g0377 261 MobiDBLite consensus disorder prediction 1 20 - -
Lal5g0377 261 Gene3D Classic Zinc Finger 62 122 - -
Lal5g0377 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Lal5g0377 261 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 22 261 - -
Lal5g0377 261 PANTHER ZINC FINGER PROTEIN JAGGED 22 261 IPR045320 GO:0003700
Lal5g0377 261 SUPERFAMILY beta-beta-alpha zinc fingers 79 110 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0377 Lal-Chr5 3809486 3810271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0377 74 159 C2H2 Transcription Factor Family AT1G80730 45.556 5.40e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal5g0377 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0377 - - lang:109329362 432.565