Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0361 ATGGCTCCTGGAGGTAGTGCTTTCAAAGAAGTTATTGTATCTCACCTGATATCTTCAGATTATGAAACAAGCAAGGCTAAGTCTGAGGCCAAGAGTAACATTACAATGACAAAATCTGTTGTTGGGTTGAACAGAAAGAATGGAATTAGCTCAAAGAATGGTGTGCATGACTTACTTGAGTGCGCGGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCAAATTGCAAGATTGAAGTAGTCCATAATATTTGCCCAACCTGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTGGAGAAAGTGGCAGAATCATTGGATCTTCCTTGCAGATATCAGACCCTAGGCTGTCACGCTATATTCCCATACTACTCAAAGCTTAAGCATGAACAAAATTGTGGATTTCGCCCATACAATTGCCCCTATGCTGGATCCGAATGCCCTGTTTTCGGTGACATTCGAACTCTTGTATCCCATCTCAAGGATGACCACAATGTTGACATGCATGATGGATGCACCTTCAATCATCGATATATTAAAGCAAATCCATTCGAAGTTGAAAATGCCACATGGATGCTAACTCTTTTCAATAGTTTCGGAAGGCATTTCTGCTTGCACTTCGAGTCGTTTCAGCTTGATACAGCTCCAGTTTATATGGCCTTTTTGCGGTATATGGGCGATGAAAGTGAAGCAATGAAATTCTGCTACAGCTTGGAAGTTGGTGCAAATGGCCGAAAACTTACATGGCAAGGAATTCCGAGGAGCATTCGTGACCATCACAGAAAAGTTAGAGACAATCAAGATGGACTCATCATTCAGAGGAAACTTGCTCTTTATTTTTCGGGCGGCGACAGAAAGGAGTTAAAGTTGAGGATCACTGGTAGGATATGGAAAGAAGGTTGA 933 0.4191 MAPGGSAFKEVIVSHLISSDYETSKAKSEAKSNITMTKSVVGLNRKNGISSKNGVHDLLECAVCKNLMYPPIHQCPNGHTLCSNCKIEVVHNICPTCHHDLGNIRCLALEKVAESLDLPCRYQTLGCHAIFPYYSKLKHEQNCGFRPYNCPYAGSECPVFGDIRTLVSHLKDDHNVDMHDGCTFNHRYIKANPFEVENATWMLTLFNSFGRHFCLHFESFQLDTAPVYMAFLRYMGDESEAMKFCYSLEVGANGRKLTWQGIPRSIRDHHRKVRDNQDGLIIQRKLALYFSGGDRKELKLRITGRIWKEG 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0361 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 170 IPR013083 -
Lal5g0361 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 182 303 IPR008974 GO:0005515
Lal5g0361 310 SUPERFAMILY RING/U-box 54 104 - -
Lal5g0361 310 SUPERFAMILY TRAF domain-like 115 307 - -
Lal5g0361 310 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lal5g0361 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 113 IPR013083 -
Lal5g0361 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 309 - -
Lal5g0361 310 ProSiteProfiles Zinc finger RING-type profile. 61 98 IPR001841 -
Lal5g0361 310 CDD RING-HC_SIAHs 59 97 - -
Lal5g0361 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 1 309 - -
Lal5g0361 310 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0361 Lal-Chr5 3298383 3303270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0361 1 309 C3H Transcription Factor Family AT2G41980 73.786 7.36e-172 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0361 K04506 - gmx:100813966 566.229