Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0354 ATGGAGCTAGCTTTGAGTTTAGGTGATACACAAAAGCCTTTTTCTATGGTTCATAAACTTTCTTCAACCTTACCTAATAGTAAAGATCCAACAAGTTTATGTATAACACTAGGAGGAGCTAGTTTCAGTGGAAAATCACAAGATAAGAAAAGGGGTTCTTCAGATCCACCACTCCAGCTTGATCTTCTTCCTTCAACACCAGTTCTTCGACCCCAACAACCTTCTTCACATCTTCAAATTCCATGGCTCACTGATGCACATGATGAAGCATTAAGGAGAAAGAGGAGAGAGGAAGAATGTGAAGAAAAAGGGAGTGATGATGATGAAAATGGCTCGACGCGCAAGAAACTCAGACTCTCAAAGGATCAATCTGCTTTTCTCGAAGAGAGCTTCAAAGAACACACCACTCTTAATCCTAAGCAGAAACTTGCACTTGCAAAACAGTTAAATCTTCGTCCTCGTCAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGTTGAAACAAACGGAAGTGGATTGTGAATATTTAAAGAGATGTTGTGAGACATTAACAGAAGAGAATAGGAAGTTACATAAAGAACTACAAGAACTAAGAGCTTTGAAAACTTCACAACCATTCTACATGCAACTTCCAGCTACTACTCTCACCATGTGTCCCTCTTGTGAAAAAGTAGCCACCAACACCACCGGATCAGCCGCCACCAAAACCACAGGAGCAGCCACCACCAACCACCATATCTCCACCACTACTACCACCAACAATGATAATAATGGTTCTCATGTCCATGCAGAATTGTCTCTTGGTAAGAATAATAACATTTTGGGCTTTCCTTATAGTCAAGCCCATCAACAAAAAGCCCATCAACAGAAAGCCCATCAAATGGCTTCATGA 900 0.4078 MELALSLGDTQKPFSMVHKLSSTLPNSKDPTSLCITLGGASFSGKSQDKKRGSSDPPLQLDLLPSTPVLRPQQPSSHLQIPWLTDAHDEALRRKRREEECEEKGSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRKLHKELQELRALKTSQPFYMQLPATTLTMCPSCEKVATNTTGSAATKTTGAATTNHHISTTTTTNNDNNGSHVHAELSLGKNNNILGFPYSQAHQQKAHQQKAHQMAS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0354 299 Coils Coil 183 206 - -
Lal5g0354 299 Pfam Homeodomain 114 168 IPR001356 GO:0003677
Lal5g0354 299 CDD homeodomain 114 171 IPR001356 GO:0003677
Lal5g0354 299 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 92 251 - -
Lal5g0354 299 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Lal5g0354 299 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Lal5g0354 299 SMART halz 170 213 IPR003106 GO:0006355|GO:0043565
Lal5g0354 299 MobiDBLite consensus disorder prediction 40 119 - -
Lal5g0354 299 Gene3D - 118 168 - -
Lal5g0354 299 Pfam Homeobox associated leucine zipper 170 204 IPR003106 GO:0006355|GO:0043565
Lal5g0354 299 MobiDBLite consensus disorder prediction 86 119 - -
Lal5g0354 299 PANTHER - 92 251 - -
Lal5g0354 299 SMART HOX_1 112 174 IPR001356 GO:0003677
Lal5g0354 299 MobiDBLite consensus disorder prediction 66 80 - -
Lal5g0354 299 SUPERFAMILY Homeodomain-like 111 179 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0354 Lal-Chr5 3242982 3246008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0354 106 227 Homeobox Transcription Factor Family AT4G37790 78.689 1.14e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal5g0354 Homeodomain 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0354 K09338 - gmx:100810885 286.574