Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0353 ATGGGGGATGAGACTTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGTCCGGAGCCACCAGCTGGCTCCACGATGAATGAAGCTATGAACTTGGATGATTGGATTATTGAGGAGCCTCTTCATAGATTTGGTGAAGGTTTGAGGCTTAGGGCACGACAACGGTGGAGATGGCGGCATCATCTTCCTATCCCTCCTTCTCCTGCAGTTCATGTTCATATTCCGGAAGTGCCACAGCATTTGCATTTTCATATACCTCCAGAAGCTCGGAATATCTCTATGGAATTGGACCAATTTTTGGTCAATTCTGGTAATGGAAGTCCCTTACAGGCTGGTGAAGGCAGTGTGGCTGCTGAGGAGAGAATGGAGGTGGAGTTGCCCAAAGCATGTGAAAATAACAATGGTATTATGGAGGATGAGACAGCAACAAAAAAGGAAGACGTTGAAAAGGGTAGTGGCAATAATGGGGATTTCTTCGATTGTAATATATGTATGGACCTGGCCAAGGATCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGCTGGCCTTGCCTATATCGATGGCTGCATTTACATTCTGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTGACTCTTAAGAATGTTACCCCGATATATGGTCGTGGAAACAATGTTCTAGTTCCTGAGGAGGACGCCACTCTTAAAATCCCTCTCAGGCCCCATGCTAGGCGTGTTGAGAGTTTGAGACAAATCCTTCAGAGAACTGCACTCACATACCCCGTTGAAGAGATGATTCGACGTCTTGGAAGCAGAATTGATCTTACTCGGGATTTTGTTCAGGCAGGTGAAACGCTTGAGAGAACCAGTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGTATCCGGAGAGAGCAGAACGCTGGGCCACCCCCGGATGATGTGGTGGGTTTGACTCAGAATAATCCTCTTGAAGCAGGGGATAGTCGAAGGCTCCATTCCCTTTCACATCGGAGAGCACAATCAAATAGAGCAAGATTCACATCAGCACTGAGTAGTTCTGCTGAAAGGTTAGTGGATGCATACTTCAGTAGCCAGCCATTTGGTAGAAACAATGAACAACCTCCACCCGTTGATGACAGAGATTCCTTTTCAAGTATCGGTGCTGTCATAAATTCAGGGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACTTCTTCCTCTAGGAGGAGAAATGATACTTCAAGAGTTTCTGATGTGGACAGTGGAGATTCTCGTGCTCCAAGGCGTAGACAATCCTTCATGAAAATAGAAACTATCTATAATGGATCGACTTTTCTAGGCATTCTCATCGTTGTGGCCTATTTCATTGGGCAAGGTCAACAGCAATTCGGGCTCATTGTTTTCGTTGTCAATAATGCAGTAGGAGATATTCCTAAACATATCACCATTGCAGAATCCCCACGCAGTAGTTCATTATTCAGGGCAAGTTATGACATAGGATTTAGGAGTCAAGATCCTAAAGAAAGCTAG 1536 0.4512 MGDETSDAMNLDLNLGPGPEPPAGSTMNEAMNLDDWIIEEPLHRFGEGLRLRARQRWRWRHHLPIPPSPAVHVHIPEVPQHLHFHIPPEARNISMELDQFLVNSGNGSPLQAGEGSVAAEERMEVELPKACENNNGIMEDETATKKEDVEKGSGNNGDFFDCNICMDLAKDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKNVTPIYGRGNNVLVPEEDATLKIPLRPHARRVESLRQILQRTALTYPVEEMIRRLGSRIDLTRDFVQAGETLERTSSLLSRFLTSRGIRREQNAGPPPDDVVGLTQNNPLEAGDSRRLHSLSHRRAQSNRARFTSALSSSAERLVDAYFSSQPFGRNNEQPPPVDDRDSFSSIGAVINSGSQVDTAVEIDSMVSLSTSSSRRRNDTSRVSDVDSGDSRAPRRRQSFMKIETIYNGSTFLGILIVVAYFIGQGQQQFGLIVFVVNNAVGDIPKHITIAESPRSSSLFRASYDIGFRSQDPKES 511
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0353 511 MobiDBLite consensus disorder prediction 360 380 - -
Lal5g0353 511 Pfam Zinc finger, C3HC4 type (RING finger) 162 202 - -
Lal5g0353 511 CDD RING-HC_AtRMA_like 160 204 - -
Lal5g0353 511 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Lal5g0353 511 MobiDBLite consensus disorder prediction 298 341 - -
Lal5g0353 511 MobiDBLite consensus disorder prediction 1 23 - -
Lal5g0353 511 MobiDBLite consensus disorder prediction 403 430 - -
Lal5g0353 511 SUPERFAMILY RING/U-box 158 215 - -
Lal5g0353 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 223 IPR013083 -
Lal5g0353 511 PANTHER OS01G0830200 PROTEIN 12 432 - -
Lal5g0353 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 432 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal5g0353 511 MobiDBLite consensus disorder prediction 413 430 - -
Lal5g0353 511 SMART ring_2 162 202 IPR001841 -
Lal5g0353 511 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal5g0353 Lal-Chr5 3218667 3221039 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0353 1 426 C3H Transcription Factor Family AT3G58030 50.552 9.61e-128 377
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0353 K10666 - gmx:100811099 576.63