Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal5g0353 | ATGGGGGATGAGACTTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGTCCGGAGCCACCAGCTGGCTCCACGATGAATGAAGCTATGAACTTGGATGATTGGATTATTGAGGAGCCTCTTCATAGATTTGGTGAAGGTTTGAGGCTTAGGGCACGACAACGGTGGAGATGGCGGCATCATCTTCCTATCCCTCCTTCTCCTGCAGTTCATGTTCATATTCCGGAAGTGCCACAGCATTTGCATTTTCATATACCTCCAGAAGCTCGGAATATCTCTATGGAATTGGACCAATTTTTGGTCAATTCTGGTAATGGAAGTCCCTTACAGGCTGGTGAAGGCAGTGTGGCTGCTGAGGAGAGAATGGAGGTGGAGTTGCCCAAAGCATGTGAAAATAACAATGGTATTATGGAGGATGAGACAGCAACAAAAAAGGAAGACGTTGAAAAGGGTAGTGGCAATAATGGGGATTTCTTCGATTGTAATATATGTATGGACCTGGCCAAGGATCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGCTGGCCTTGCCTATATCGATGGCTGCATTTACATTCTGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTGACTCTTAAGAATGTTACCCCGATATATGGTCGTGGAAACAATGTTCTAGTTCCTGAGGAGGACGCCACTCTTAAAATCCCTCTCAGGCCCCATGCTAGGCGTGTTGAGAGTTTGAGACAAATCCTTCAGAGAACTGCACTCACATACCCCGTTGAAGAGATGATTCGACGTCTTGGAAGCAGAATTGATCTTACTCGGGATTTTGTTCAGGCAGGTGAAACGCTTGAGAGAACCAGTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGTATCCGGAGAGAGCAGAACGCTGGGCCACCCCCGGATGATGTGGTGGGTTTGACTCAGAATAATCCTCTTGAAGCAGGGGATAGTCGAAGGCTCCATTCCCTTTCACATCGGAGAGCACAATCAAATAGAGCAAGATTCACATCAGCACTGAGTAGTTCTGCTGAAAGGTTAGTGGATGCATACTTCAGTAGCCAGCCATTTGGTAGAAACAATGAACAACCTCCACCCGTTGATGACAGAGATTCCTTTTCAAGTATCGGTGCTGTCATAAATTCAGGGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACTTCTTCCTCTAGGAGGAGAAATGATACTTCAAGAGTTTCTGATGTGGACAGTGGAGATTCTCGTGCTCCAAGGCGTAGACAATCCTTCATGAAAATAGAAACTATCTATAATGGATCGACTTTTCTAGGCATTCTCATCGTTGTGGCCTATTTCATTGGGCAAGGTCAACAGCAATTCGGGCTCATTGTTTTCGTTGTCAATAATGCAGTAGGAGATATTCCTAAACATATCACCATTGCAGAATCCCCACGCAGTAGTTCATTATTCAGGGCAAGTTATGACATAGGATTTAGGAGTCAAGATCCTAAAGAAAGCTAG | 1536 | 0.4512 | MGDETSDAMNLDLNLGPGPEPPAGSTMNEAMNLDDWIIEEPLHRFGEGLRLRARQRWRWRHHLPIPPSPAVHVHIPEVPQHLHFHIPPEARNISMELDQFLVNSGNGSPLQAGEGSVAAEERMEVELPKACENNNGIMEDETATKKEDVEKGSGNNGDFFDCNICMDLAKDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKNVTPIYGRGNNVLVPEEDATLKIPLRPHARRVESLRQILQRTALTYPVEEMIRRLGSRIDLTRDFVQAGETLERTSSLLSRFLTSRGIRREQNAGPPPDDVVGLTQNNPLEAGDSRRLHSLSHRRAQSNRARFTSALSSSAERLVDAYFSSQPFGRNNEQPPPVDDRDSFSSIGAVINSGSQVDTAVEIDSMVSLSTSSSRRRNDTSRVSDVDSGDSRAPRRRQSFMKIETIYNGSTFLGILIVVAYFIGQGQQQFGLIVFVVNNAVGDIPKHITIAESPRSSSLFRASYDIGFRSQDPKES | 511 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal5g0353 | 511 | MobiDBLite | consensus disorder prediction | 360 | 380 | - | - | |
Lal5g0353 | 511 | Pfam | Zinc finger, C3HC4 type (RING finger) | 162 | 202 | - | - | |
Lal5g0353 | 511 | CDD | RING-HC_AtRMA_like | 160 | 204 | - | - | |
Lal5g0353 | 511 | ProSitePatterns | Zinc finger RING-type signature. | 177 | 186 | IPR017907 | - | |
Lal5g0353 | 511 | MobiDBLite | consensus disorder prediction | 298 | 341 | - | - | |
Lal5g0353 | 511 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lal5g0353 | 511 | MobiDBLite | consensus disorder prediction | 403 | 430 | - | - | |
Lal5g0353 | 511 | SUPERFAMILY | RING/U-box | 158 | 215 | - | - | |
Lal5g0353 | 511 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 223 | IPR013083 | - | |
Lal5g0353 | 511 | PANTHER | OS01G0830200 PROTEIN | 12 | 432 | - | - | |
Lal5g0353 | 511 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 12 | 432 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Lal5g0353 | 511 | MobiDBLite | consensus disorder prediction | 413 | 430 | - | - | |
Lal5g0353 | 511 | SMART | ring_2 | 162 | 202 | IPR001841 | - | |
Lal5g0353 | 511 | ProSiteProfiles | Zinc finger RING-type profile. | 162 | 203 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal5g0353 | Lal-Chr5 | 3218667 | 3221039 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal5g0353 | 1 | 426 | C3H Transcription Factor Family | AT3G58030 | 50.552 | 9.61e-128 | 377 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal5g0353 | K10666 | - | gmx:100811099 | 576.63 |