Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0338 ATGGATACCCGTAAGAGAGGAAGGCACGACTTCAACAACTTCAATGGTGGCTTCAAGAAAACCAAGCCAGAAACGGACTCCTTATCAACCGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGCTGCCCATTTGGTGAGAGCTGCCACTTTCTGCACTACGTTCCTGGTGGTTATAATGCTATTGCACATATGATGCATATAACACCTGCTGCACCTCCGCCATCTAGAAATATCGCAGCCCCCCAACCTGTCTCTAATGGGTCCGCACAGCCTACAGTTAAAAGCCGCGTATGCAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGATAAATGCCGTTTTGCCCATGGTGAATGGGAACTCGGCAAGCCTATTGCCCCATCATTTGATGATCATCGTCCCCTGGGACCCCCTTCAGCGAGTCGTATGCCTGGTCGAATGGAGGCTCCTCCGGGTCTAGCTGCTAGCTTTGGTGCTAATGCCACTGCCAAGATCAGTGTAGAAGCTTCACTGGCTGGAGCAATCATTGGAAAGGGTGGCGTGAACTCAAAGCAGATCTGTCGCCAAACAGGAGCCAAACTTTCAATTCGAGATCATGAATCTGATTCAAATCTCAGAAACATTGAACTGGAGGGTAGTTTTGAACAAATCAACGAAGCAAGTAACATGGTCAAGGAATTACTTTTCACCTTGCAGATGTCTGCACCACCTAAAACAAAGTCTGGCGGTCCTGGCGGCCATGCCCCTCCTGGAAGCAACTTCAAGACCAAGTTGTGTGACAATTTTACAAAAGGGTCATGCACTTTTGGAGAAAGATGTCACTTTGCACATGGAGCCGCCGACCTGCGTAAATGA 876 0.4806 MDTRKRGRHDFNNFNGGFKKTKPETDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAIAHMMHITPAAPPPSRNIAAPQPVSNGSAQPTVKSRVCNKFNTAEGCKFGDKCRFAHGEWELGKPIAPSFDDHRPLGPPSASRMPGRMEAPPGLAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDSNLRNIELEGSFEQINEASNMVKELLFTLQMSAPPKTKSGGPGGHAPPGSNFKTKLCDNFTKGSCTFGERCHFAHGAADLRK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0338 291 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Lal5g0338 291 CDD KH-I 169 232 - -
Lal5g0338 291 Gene3D - 258 291 - -
Lal5g0338 291 Gene3D - 91 130 - -
Lal5g0338 291 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Lal5g0338 291 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 291 - -
Lal5g0338 291 Gene3D K Homology domain, type 1 163 257 IPR036612 GO:0003723
Lal5g0338 291 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Lal5g0338 291 MobiDBLite consensus disorder prediction 1 15 - -
Lal5g0338 291 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 291 - -
Lal5g0338 291 Pfam KH domain 170 233 IPR004088 GO:0003723
Lal5g0338 291 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Lal5g0338 291 Pfam CCCH-type zinc finger 102 124 IPR041367 -
Lal5g0338 291 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 239 IPR036612 GO:0003723
Lal5g0338 291 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Lal5g0338 291 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Lal5g0338 291 SMART c3hfinal6 100 125 IPR000571 GO:0046872
Lal5g0338 291 SMART kh_6 166 236 IPR004087 GO:0003676
Lal5g0338 291 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Lal5g0338 291 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Lal5g0338 291 MobiDBLite consensus disorder prediction 1 32 - -
Lal5g0338 291 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 285 IPR000571 GO:0046872
Lal5g0338 291 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Lal5g0338 291 MobiDBLite consensus disorder prediction 18 32 - -
Lal5g0338 291 SUPERFAMILY CCCH zinc finger 260 290 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0338 Lal-Chr5 3088995 3092377 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal5g0338 KH_1 3.6e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0338 - - gmx:100803981 496.123