Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal5g0338 | ATGGATACCCGTAAGAGAGGAAGGCACGACTTCAACAACTTCAATGGTGGCTTCAAGAAAACCAAGCCAGAAACGGACTCCTTATCAACCGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGCTGCCCATTTGGTGAGAGCTGCCACTTTCTGCACTACGTTCCTGGTGGTTATAATGCTATTGCACATATGATGCATATAACACCTGCTGCACCTCCGCCATCTAGAAATATCGCAGCCCCCCAACCTGTCTCTAATGGGTCCGCACAGCCTACAGTTAAAAGCCGCGTATGCAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGATAAATGCCGTTTTGCCCATGGTGAATGGGAACTCGGCAAGCCTATTGCCCCATCATTTGATGATCATCGTCCCCTGGGACCCCCTTCAGCGAGTCGTATGCCTGGTCGAATGGAGGCTCCTCCGGGTCTAGCTGCTAGCTTTGGTGCTAATGCCACTGCCAAGATCAGTGTAGAAGCTTCACTGGCTGGAGCAATCATTGGAAAGGGTGGCGTGAACTCAAAGCAGATCTGTCGCCAAACAGGAGCCAAACTTTCAATTCGAGATCATGAATCTGATTCAAATCTCAGAAACATTGAACTGGAGGGTAGTTTTGAACAAATCAACGAAGCAAGTAACATGGTCAAGGAATTACTTTTCACCTTGCAGATGTCTGCACCACCTAAAACAAAGTCTGGCGGTCCTGGCGGCCATGCCCCTCCTGGAAGCAACTTCAAGACCAAGTTGTGTGACAATTTTACAAAAGGGTCATGCACTTTTGGAGAAAGATGTCACTTTGCACATGGAGCCGCCGACCTGCGTAAATGA | 876 | 0.4806 | MDTRKRGRHDFNNFNGGFKKTKPETDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAIAHMMHITPAAPPPSRNIAAPQPVSNGSAQPTVKSRVCNKFNTAEGCKFGDKCRFAHGEWELGKPIAPSFDDHRPLGPPSASRMPGRMEAPPGLAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDSNLRNIELEGSFEQINEASNMVKELLFTLQMSAPPKTKSGGPGGHAPPGSNFKTKLCDNFTKGSCTFGERCHFAHGAADLRK | 291 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal5g0338 | 291 | Pfam | RNA-binding, Nab2-type zinc finger | 38 | 58 | - | - | |
Lal5g0338 | 291 | CDD | KH-I | 169 | 232 | - | - | |
Lal5g0338 | 291 | Gene3D | - | 258 | 291 | - | - | |
Lal5g0338 | 291 | Gene3D | - | 91 | 130 | - | - | |
Lal5g0338 | 291 | ProSiteProfiles | Zinc finger C3H1-type profile. | 33 | 61 | IPR000571 | GO:0046872 | |
Lal5g0338 | 291 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 8 | 291 | - | - | |
Lal5g0338 | 291 | Gene3D | K Homology domain, type 1 | 163 | 257 | IPR036612 | GO:0003723 | |
Lal5g0338 | 291 | ProSiteProfiles | Zinc finger C3H1-type profile. | 98 | 126 | IPR000571 | GO:0046872 | |
Lal5g0338 | 291 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Lal5g0338 | 291 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 8 | 291 | - | - | |
Lal5g0338 | 291 | Pfam | KH domain | 170 | 233 | IPR004088 | GO:0003723 | |
Lal5g0338 | 291 | ProSiteProfiles | Zinc finger C3H1-type profile. | 260 | 287 | IPR000571 | GO:0046872 | |
Lal5g0338 | 291 | Pfam | CCCH-type zinc finger | 102 | 124 | IPR041367 | - | |
Lal5g0338 | 291 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 157 | 239 | IPR036612 | GO:0003723 | |
Lal5g0338 | 291 | SMART | c3hfinal6 | 33 | 60 | IPR000571 | GO:0046872 | |
Lal5g0338 | 291 | SMART | c3hfinal6 | 260 | 286 | IPR000571 | GO:0046872 | |
Lal5g0338 | 291 | SMART | c3hfinal6 | 100 | 125 | IPR000571 | GO:0046872 | |
Lal5g0338 | 291 | SMART | kh_6 | 166 | 236 | IPR004087 | GO:0003676 | |
Lal5g0338 | 291 | ProSiteProfiles | Type-1 KH domain profile. | 167 | 231 | - | - | |
Lal5g0338 | 291 | SUPERFAMILY | CCCH zinc finger | 97 | 129 | IPR036855 | GO:0046872 | |
Lal5g0338 | 291 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Lal5g0338 | 291 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 261 | 285 | IPR000571 | GO:0046872 | |
Lal5g0338 | 291 | SUPERFAMILY | CCCH zinc finger | 34 | 59 | IPR036855 | GO:0046872 | |
Lal5g0338 | 291 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
Lal5g0338 | 291 | SUPERFAMILY | CCCH zinc finger | 260 | 290 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal5g0338 | Lal-Chr5 | 3088995 | 3092377 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Lal5g0338 | KH_1 | 3.6e-12 | CL0007 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal5g0338 | - | - | gmx:100803981 | 496.123 |