Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0334 ATGAACCAGAACAAGAATGATTGCCATGAACTGATTCAACACAGTCATGGACTAAATGGGGAGTTGAATTCCGAGTTTGTCAATTATTCTTGTGAATATTTTGATATGACCCAAACTTGTAATATTAGAAGTTGTAATCAGCCACTTGTAATGGCCGGAGTTGGAGGAGCGGAACAACAGCTACCATACATAAGCACTGCTAAATCATCTAACACAATTATCAACCGTTTTGAGTCACCGGCTTCTGCGTTTTACGCGGCCGAAAGGTGTATGGGATTCTTAGAATATGATTGCCAAGGTGGAAGTATTAGTCACTCTTTGAGCCCTGAAATATCTAAGGTCAGTGATTTGGAATTCCCTTTCTATCAACCTGAACCCAACTTTGAATTGTGCAACTCCATCACTTTGCAAGGAATGGTGAATGCTCAATTGAATAGTAACAAATGTTGTACATCACCTCAAAAGTTCAATAAAAACCCATGTGGTAATAATTTTCCTATGACAAAGTTCTTTCCAATTGAACAACAAAAGTTGTTCATTGATGGTACTTCCTCACTAAACATGAGTTCAACATTTCATATTGAAGGAAATCAAGATCATAACACAGTAGCTTATGGTTCTTATAACTTGCCTGTTCCACAGATGATATCAACAACAGTTTCAACAGGAAATGGGTCAACTAGTTCTGGAAATCCTGCTTCTAATGGAACAATAGTCACGAGTAAAACGCGAATTAGATGGACTCGAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTCGGTGGCTCCGAGAAAGCAACTCCAAAAGCTATATTAAAGATGATGGACTCACATGGATTGACCATCTTTCATGTCAAAAGTCATTTGCAAAAGTATAGAATAGCAAAGTACATGCCAGAGCCATTTCAAGGGAAATCTGACAAAAGAATGCATATAGAGGATGTGCATCATTTTGATGTCAAAACTGGCTTGCAAATTAGAGAGACACTTCAGCTGCAATTAGATGCTCAAATGCGTCTTCATGAACAACTAGAGATTCAGAGAACATTACAACTACAAATTGAGGAACAAGGGAGGCAGCTGAAAAAAATGTTTGACCAGCAGCAGAAGAAAAGTTATAGCCTCATGAATTCTACTCAGAATAAAGACAATGATGATATAACAATTAGTGATAAAGATGTGGATATTTCAATTTATGAAGAGTGTTGA 1215 0.3753 MNQNKNDCHELIQHSHGLNGELNSEFVNYSCEYFDMTQTCNIRSCNQPLVMAGVGGAEQQLPYISTAKSSNTIINRFESPASAFYAAERCMGFLEYDCQGGSISHSLSPEISKVSDLEFPFYQPEPNFELCNSITLQGMVNAQLNSNKCCTSPQKFNKNPCGNNFPMTKFFPIEQQKLFIDGTSSLNMSSTFHIEGNQDHNTVAYGSYNLPVPQMISTTVSTGNGSTSSGNPASNGTIVTSKTRIRWTRDLHEKFVECVNRLGGSEKATPKAILKMMDSHGLTIFHVKSHLQKYRIAKYMPEPFQGKSDKRMHIEDVHHFDVKTGLQIRETLQLQLDAQMRLHEQLEIQRTLQLQIEEQGRQLKKMFDQQQKKSYSLMNSTQNKDNDDITISDKDVDISIYEEC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0334 404 Pfam Myb-like DNA-binding domain 246 295 IPR001005 -
Lal5g0334 404 Coils Coil 329 349 - -
Lal5g0334 404 Pfam MYB-CC type transfactor, LHEQLE motif 326 372 IPR025756 -
Lal5g0334 404 SUPERFAMILY Homeodomain-like 240 296 IPR009057 -
Lal5g0334 404 Gene3D - 241 300 - -
Lal5g0334 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 299 IPR017930 -
Lal5g0334 404 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 242 297 IPR006447 GO:0003677
Lal5g0334 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 44 402 IPR044848 GO:0003700
Lal5g0334 404 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 44 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0334 Lal-Chr5 3020500 3024175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0334 232 381 G2-like Transcription Factor Family AT3G04450 55.195 3.11e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal5g0334 Myb_DNA-binding 6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0334 - - gmx:100527766 447.973