LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal5g0317	ATGGCACATAAGAAAGCTTTCTTATTAGGACAACAAGAACAAGAGCAAGAGACAAAGCTTTTAGGTTCTTCACTGATCATGGCTTCTGGTAGTGTTAAAAACACCAACCCAACAACAACAACTACAACACAACTTGAACCACTCCCACAACCTCGTCATAATCATCAACAACAACATCATCATCACCACTTTCATCAAATACAAGACAACCAAATATCTTTTGGAATGATGCAATCTTCTTCTTCATCCACTATCCCAGGAAACTATCTAAGCATGGACTCTGGAGCTTATGATTTGGGTGAATTGGATCAAGCTCTTTTTCTTTATCTTGATGGACAAGGTGACCCTTCAAGTGTACAAGACCAAAGACAGAATTCATCATCATCAGGAATGAGACCTCCAACTCTAAACATTTTCCCTTCTCAGCCTATGCACGCAGTGCCATCATCATCCAATTCCAAGGCTGGCATGGACTTAGTATCAACACAAATAAGTGGTTCCAAGAAACCATCAGAACGGTTAATGGAGTTGGCCAACCCAAGAAATGATACAGCTTCTGCACCTGAACCTCCCAAAGCTGTCAAGCGAGTAACCAACCGCAAGGGTCCAACATCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGAAAAAGCAGACTTAGGAAAAAGGCTTATGTTCAGCAACTAGAGTCCAGTAGGATGAGGCTTAATCAACTGGAACAAGAGCTACAACGTGCTAGAGCTCAAGGCATGTTCATTGGTGGAGGTGCACTTATTGGAGGAGATCAACAAGGTCTTCCTGTATCTATGAATAGCACTAGCTCAGAGGCTGCAATGTTTGATGTGGAGTATGCAAGATGGCAAGAAGAACATCACAGGCTAGTGTGTGAGCTAAGAGCTGCAGTTCAAGAACACCTTCCGGAAAACGAGCTTCGAATGTATGTGGATGGTTGCTTAGCACATTATGATCAAGTCATGAATCTCAAGAGCTTAGTAGCCAAAGCAGATGTATTTCATCTTGTTTCTGGCATGTGGAAAACACCAGCTGAAAGATGCTTCTTGTGGATTGGTGGATTCAGACCATCTGAACTCATTAAGATTATTCTTAGCCAAATTGAACCTCTTTCGGAGCAACAAATACTTGGTATATGTGGGTTGCAACAATCTACACAAGAGGCAGAAGATGCTCTCTCCCAAGGGCTTGATGCTTTGAATCAATCTCTCTCGGACACTATAACTTCTGATTCTTTGAGTTGTCCTCCAAACATGGCTAACTACATGGGACAAATGGCCATAGCCATGAACAAACTCTCCACTCTTGAAGGTTTTGTTAGACAGGCAGATAATCTGAGGCACCAAACCATTCATCGTCTGCACCAAATCCTAACAACACGCCAAGCAGCAAGGTGTTTATTGGCCATAGCAGAGTACGTTCATCGTCTGAGAGCACTGAGTTCTCTATGGTTGGCACGGCCACGCCAAGAATAG	1533	0.4299	MAHKKAFLLGQQEQEQETKLLGSSLIMASGSVKNTNPTTTTTTQLEPLPQPRHNHQQQHHHHHFHQIQDNQISFGMMQSSSSSTIPGNYLSMDSGAYDLGELDQALFLYLDGQGDPSSVQDQRQNSSSSGMRPPTLNIFPSQPMHAVPSSSNSKAGMDLVSTQISGSKKPSERLMELANPRNDTASAPEPPKAVKRVTNRKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRMRLNQLEQELQRARAQGMFIGGGALIGGDQQGLPVSMNSTSSEAAMFDVEYARWQEEHHRLVCELRAAVQEHLPENELRMYVDGCLAHYDQVMNLKSLVAKADVFHLVSGMWKTPAERCFLWIGGFRPSELIKIILSQIEPLSEQQILGICGLQQSTQEAEDALSQGLDALNQSLSDTITSDSLSCPPNMANYMGQMAIAMNKLSTLEGFVRQADNLRHQTIHRLHQILTTRQAARCLLAIAEYVHRLRALSSLWLARPRQE	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal5g0317	510	MobiDBLite	consensus disorder prediction	30	52	-	-
	Lal5g0317	510	MobiDBLite	consensus disorder prediction	202	221	-	-
	Lal5g0317	510	Coils	Coil	237	264	-	-
	Lal5g0317	510	SUPERFAMILY	Leucine zipper domain	218	260	IPR046347	GO:0003700\|GO:0006355
	Lal5g0317	510	CDD	bZIP_HBP1b-like	218	270	-	-
	Lal5g0317	510	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	221	236	IPR004827	GO:0003700\|GO:0006355
	Lal5g0317	510	MobiDBLite	consensus disorder prediction	30	60	-	-
	Lal5g0317	510	Pfam	Seed dormancy control	310	384	IPR025422	GO:0006351\|GO:0043565
	Lal5g0317	510	Pfam	bZIP transcription factor	218	256	IPR004827	GO:0003700\|GO:0006355
	Lal5g0317	510	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	216	260	IPR004827	GO:0003700\|GO:0006355
	Lal5g0317	510	Gene3D	-	217	266	-	-
	Lal5g0317	510	MobiDBLite	consensus disorder prediction	115	156	-	-
	Lal5g0317	510	ProSiteProfiles	DOG1 domain profile.	292	506	IPR025422	GO:0006351\|GO:0043565
	Lal5g0317	510	MobiDBLite	consensus disorder prediction	113	156	-	-
	Lal5g0317	510	PANTHER	BZIP TRANSCRIPTION FACTOR TGA10	102	509	-	-
	Lal5g0317	510	PANTHER	TRANSCRIPTION FACTOR TGA9	102	509	-	-
	Lal5g0317	510	MobiDBLite	consensus disorder prediction	179	221	-	-
	Lal5g0317	510	SMART	brlzneu	214	301	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal5g0317	Lal-Chr5	2798981	2809416	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal5g0317	87	510	Basic region leucine zipper (bZIP) Transcription Factor Gene Family	AT5G06839	65.011	0.0	548

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lal5g0317		DOG1	4.7e-32	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal5g0317	K14431		-	gmx:100815176	751.895