Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0309 ATGGCGGAAATGAAGAAAGAGAGTGTGAAACTGTTCGTGGGTCAAGTACCGAAACACATGACTGAAGATGAATTAGTTACAATGTTCAAAGAATTTGCTTTGGTTGAAGAAGTTAACATTATCAAAGACAAAGCCACACGCGCTTCAAGAGGTTGTTGCTTTTTGATTTGTCCGTCGAAGGTAGAAGCGGATAAGGTGGTCAATGCCTGTCATAATAAGAAGACTATACCAGGGGCTTCTGGTCCATTGCAAGTGAAATATGCAGATGGCGAGTTGGAAAGACTAGAACATAAACTCTTTATCGGCATGCTTCCGAAGAATGTTTCTGAAGTTGAAGTCTCTGCACTTTTCTCCAATTATGGAACTGTAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCGTTTTTGAAGTACGAAACCAAAGAACAAGCACTTGCTGCTTTGGAGGCAATCAATGGAAAGCACAAAATGGAGGGTTCAAGTGTTCCGTTGGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCACGGAGAGCTGAGAAAGCGCAGTCGCAAACTTCTAATGTGCCACACGCCGATTCTCAGCATCCTTCATTATTTGGAGCCATGCCAATGGGTTATGTCCCTCCGCATAATGGATATGGTTATCAGGCTCCCGGGGGTTACGGGATCATGCCATACCGCTTGCCACCCATGCAGAATCAACCTGGTTTTCATAACATGATGCCTCACATGAATCAAGGAAATGCATTACGGCCTGATCTTGGGCCCAATATGAACCCTAGAAATTATCCTTTGCCTCCTGCAAGTTATGTCGGCTCTTACCCTGCTGTGCCAGGCGTACGGCATCCGATGGCGTATCCTGGAGGAATGATTAGTCCAAGACCTATGAGTAGTTCTCCTGGTTCCATTTCTCCCGCAGGCGGAAATAGCAACTTTTCTATGTATTCAGGTGCTGGGAAACATTCCGGTGGCGGTCAGGTTGAAGGTGGACCACCCGGTGCCAATTTATTTATTTACCACATACCTCAAGAATTCGGAGATCAAGAGCTTGCAACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTCGATAAAGTGACAGGTGTTAGCAAATGTTTCGGGTTTGTTAGTTATGATTCCCCAGAAGCTGCTCAATCTGCAATTAGTATGATGAATGGAAGCCAATTAGGAGATAAGAAATTAAAGGTTCAGCTTAAGAGGGAAAACAAACAGAATAAGGCATACTAA 1284 0.4346 MAEMKKESVKLFVGQVPKHMTEDELVTMFKEFALVEEVNIIKDKATRASRGCCFLICPSKVEADKVVNACHNKKTIPGASGPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTVKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAEKAQSQTSNVPHADSQHPSLFGAMPMGYVPPHNGYGYQAPGGYGIMPYRLPPMQNQPGFHNMMPHMNQGNALRPDLGPNMNPRNYPLPPASYVGSYPAVPGVRHPMAYPGGMISPRPMSSSPGSISPAGGNSNFSMYSGAGKHSGGGQVEGGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKVTGVSKCFGFVSYDSPEAAQSAISMMNGSQLGDKKLKVQLKRENKQNKAY 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0309 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 90 IPR000504 GO:0003723
Lal5g0309 427 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 6 414 - -
Lal5g0309 427 SMART rrm1_1 10 86 IPR000504 GO:0003723
Lal5g0309 427 SMART rrm1_1 343 416 IPR000504 GO:0003723
Lal5g0309 427 SMART rrm1_1 98 173 IPR000504 GO:0003723
Lal5g0309 427 Gene3D - 1 92 IPR012677 -
Lal5g0309 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 420 IPR000504 GO:0003723
Lal5g0309 427 PANTHER RNA BINDING PROTEIN 6 414 - -
Lal5g0309 427 SUPERFAMILY RNA-binding domain, RBD 5 92 IPR035979 GO:0003676
Lal5g0309 427 CDD RRM1_2_CELF1-6_like 98 173 - -
Lal5g0309 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Lal5g0309 427 Gene3D - 325 426 IPR012677 -
Lal5g0309 427 MobiDBLite consensus disorder prediction 179 203 - -
Lal5g0309 427 CDD RRM3_CELF1-6 344 416 - -
Lal5g0309 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 162 IPR000504 GO:0003723
Lal5g0309 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 76 IPR000504 GO:0003723
Lal5g0309 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 344 414 IPR000504 GO:0003723
Lal5g0309 427 SUPERFAMILY RNA-binding domain, RBD 97 423 IPR035979 GO:0003676
Lal5g0309 427 PRINTS Paraneoplastic encephalomyelitis antigen family signature 9 24 IPR002343 GO:0003723|GO:1990904
Lal5g0309 427 PRINTS Paraneoplastic encephalomyelitis antigen family signature 102 117 IPR002343 GO:0003723|GO:1990904
Lal5g0309 427 PRINTS Paraneoplastic encephalomyelitis antigen family signature 117 129 IPR002343 GO:0003723|GO:1990904
Lal5g0309 427 PRINTS Paraneoplastic encephalomyelitis antigen family signature 158 175 IPR002343 GO:0003723|GO:1990904
Lal5g0309 427 Gene3D - 93 186 IPR012677 -
Lal5g0309 427 CDD RRM1_2_CELF1-6_like 10 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0309 Lal-Chr5 2720287 2725134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0309 341 427 Eukaryotic Initiation Factors Gene Family AT1G71770 35.632 1.20e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0309 K13207 - gmx:100813239 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0309 5 2720287 2725134 Lal5g0309 5 2720287 2725134 ECH
Lal5g0309 5 2720287 2725134 Lal18g0445 18 3684762 3690832 LSH
Lal5g0309 5 2720287 2725134 Lal13g1316 13 11997902 12004965 PCT
Lal13g1316 13 11997902 12004965 Lal5g0309 5 2720287 2725134 PCT