Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0299 ATGAGTGCTTCTTGTCATAGACCATGTGATTATTGTGGTCACACAATAGCACTTTTATATTGCAAAGCTGATTCTGCAAAACTTTGTTTTTCTTGTGACCGTGAAGTTCATTCCACAAACCAGCTTTTCTCAAAGCATACTCGTTTTCTTCTATGTGATATATGTGATGATTCTCCTGCTACTATATTCTGTTCAACAGAGTCTTCTGTTTTATGCCAGAACTGTGACTGGGAAAAACACAACAATAATAATAATAATTCTATGTCTTCTAAGCATGAAAGAAGGCCTCTTGAAGGGTTTAATGGGTGCCCTTGTGTTAATGAATTGTTAGGAATTGTTGGGTTTGAAGATATTGAAAAAAAATCTCTGCTTTCTTCAGATTTTGAAAGTGGTGATGGTTATTTTAGGTATGATATTGAAGGGGTTTCCGATATGTTTGTGTGGGATACTCCTTCTGTTGTAAGTCTTGATGATTTGATTTCTACTTCTGGTTCTTCTCATAATTTTCAGGCTATGGAGGTTCCTCTTTTACCCAAGAATCGAAAAGCTGCGTGTGGGATGCACAAAGAAGAGGTTCTTAGTCAGCTTAGTAAGCTAGCAAAATCTGAGCCCTTGGATTTGGACATTGAACAATATGTGCTATCAGGGAATTTATCAACTGGTTTTGAAGGTGGCTTAGAGCCTAAAATGTTTCCTTCTTTTGAGTGGCATAGAGAAAACAGTGAGCATATAAATCAAGTAGTTCCACTTCCAACTTATACTGAAGAAGTTCCAGTTAAACATTCAACTTCTGCTGTCTGGGAAACTCATAACTACGGTGTCAACGAAGGGACGCCGACACATTCTCTTACAAATGAAACCTTACCAACTACTCCTAAAGCTGTTCCATGTGAGCTAATGAGTCAAGAAAGAGATTCTGCATTGCTACGTTACAAGCAGAAGAAGAAAACAAGAAGATATGAGAAGCACATAAGATACGAATCGCGAAAGGTTCGGGCAGAAAGCAGGGTACGAGTTAAGGGCCGATTTGCCAAAATGAAAGACTGA 1047 0.383 MSASCHRPCDYCGHTIALLYCKADSAKLCFSCDREVHSTNQLFSKHTRFLLCDICDDSPATIFCSTESSVLCQNCDWEKHNNNNNNSMSSKHERRPLEGFNGCPCVNELLGIVGFEDIEKKSLLSSDFESGDGYFRYDIEGVSDMFVWDTPSVVSLDDLISTSGSSHNFQAMEVPLLPKNRKAACGMHKEEVLSQLSKLAKSEPLDLDIEQYVLSGNLSTGFEGGLEPKMFPSFEWHRENSEHINQVVPLPTYTEEVPVKHSTSAVWETHNYGVNEGTPTHSLTNETLPTTPKAVPCELMSQERDSALLRYKQKKKTRRYEKHIRYESRKVRAESRVRVKGRFAKMKD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0299 348 CDD Bbox1_BBX-like 8 51 - -
Lal5g0299 348 CDD Bbox1_BBX-like 51 97 - -
Lal5g0299 348 Pfam CCT motif 304 346 IPR010402 GO:0005515
Lal5g0299 348 ProSiteProfiles CCT domain profile. 304 346 IPR010402 GO:0005515
Lal5g0299 348 ProSiteProfiles Zinc finger B-box type profile. 9 51 IPR000315 GO:0008270
Lal5g0299 348 ProSiteProfiles Zinc finger B-box type profile. 47 97 IPR000315 GO:0008270
Lal5g0299 348 Pfam B-box zinc finger 51 97 IPR000315 GO:0008270
Lal5g0299 348 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 6 347 - -
Lal5g0299 348 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 6 347 - -
Lal5g0299 348 SMART bboxneu5 52 97 IPR000315 GO:0008270
Lal5g0299 348 SMART bboxneu5 4 51 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0299 Lal-Chr5 2644570 2648669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0299 7 319 C2C2-CO-like Transcription Factor Family AT2G47890 41.194 2.43e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal5g0299 zf-B_box 6.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0299 - - gmx:100777428 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0299 5 2644570 2648669 Lal5g0299 5 2644570 2648669 ECH
Lal3g1328 3 19066200 19070170 Lal5g0299 5 2644570 2648669 LSH