Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0298 ATGGAAAATCACTCAGATTCTGTTCCATCAACTGAAACAAGAGAAGATTTTGGGAAATTGCAACATGGATGCGAGCACTATAAACGACGGTGTAAAATTCGAGCCCCTTGTTGCAATCAGATTTTTCCTTGTCGTCACTGTCATAACGAAACTATGAGCTCACTTACCAATCCCAAGGATCGTCATGAACTTGTTAGATGCGATGTCAAACAAGTTATATGTTCTATCTGCGATATTGAGCAGGAGGCTGCCAAGGTGTGTTCTAATTGTGGCGTCAACATGGGAGAATATTATTGTGAGATTTGCAAATTCTATGATGATGATACAGATAAAAAACAATTTCATTGTGATCAATGTGGGATTTGCAGGGTTGGTGGTCGTAATAATTTCTTTCACTGTGAGAAATGTGGCTCTTGCTATTCAGTGGGTTTGCAAGACAATCACTTATGTGTAGAAAACTCAATGAAAAATTTCTGCCCTGTCTGCTATGAGTATCTATTTGATTCAATAAAAGGCACCACAGTTTTGAGGTGTGGACACACAATGCATGTGGAATGCTTTGAGGAAATGGCAACTCAAAATCAATATCGTTGTCCTATCTGCTCCAAGTCAATATTTGATATGTCTCAGAATTGGGGTCATTTAGATCAGGAGATTGAAACTGTTCCCATGCCAGAAGAGTATAATTTTGAGGCAGAAAACCCAATGGCCAGTTTGAACCGACTGCCCAGAAAACGATCTCATAAAAAATGGCCAGTTTTAACCGACTGCCTAGAAAAATATCTCATCAAAAATGGCCAGATTGATCCGATGAGCCAAAAAAATGATCTGATTGGTTTGACAGGGTTTATCCTTATCTCTTCGACGTGTGTCAAGCATGTATTGACTTGGTCAACACCTGTTCCAAGCGTTTGGTTGTGTGCGACCTCCGCCACCTCAAAACTCTTGTTTCAATTCTGTGCAATGATTGCAACACTACCAGCACAGTTTCCTTTCACATATTTGGTCATAAGTGCACAAACTGCGGGTCATATAACACCCGTAGGCAGTAAAGATTTCGATGTTAAAGGGTGA 1074 0.4013 MENHSDSVPSTETREDFGKLQHGCEHYKRRCKIRAPCCNQIFPCRHCHNETMSSLTNPKDRHELVRCDVKQVICSICDIEQEAAKVCSNCGVNMGEYYCEICKFYDDDTDKKQFHCDQCGICRVGGRNNFFHCEKCGSCYSVGLQDNHLCVENSMKNFCPVCYEYLFDSIKGTTVLRCGHTMHVECFEEMATQNQYRCPICSKSIFDMSQNWGHLDQEIETVPMPEEYNFEAENPMASLNRLPRKRSHKKWPVLTDCLEKYLIKNGQIDPMSQKNDLIGLTGFILISSTCVKHVLTWSTPVPSVWLCATSATSKLLFQFCAMIATLPAQFPFTYLVISAQTAGHITPVGSKDFDVKG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0298 357 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 15 236 IPR031109 GO:0008270|GO:0016567
Lal5g0298 357 SUPERFAMILY RING/U-box 158 207 - -
Lal5g0298 357 Pfam zinc-RING finger domain 159 203 IPR001841 -
Lal5g0298 357 ProSiteProfiles Zinc finger CTCHY-type profile. 94 158 IPR017921 -
Lal5g0298 357 SUPERFAMILY Zinc hairpin stack 95 152 IPR037275 -
Lal5g0298 357 ProSiteProfiles Zinc finger CHY-type profile. 17 92 IPR008913 GO:0008270
Lal5g0298 357 SMART ring_2 159 201 IPR001841 -
Lal5g0298 357 ProSiteProfiles Zinc finger RING-type profile. 159 202 IPR001841 -
Lal5g0298 357 Pfam CHY zinc finger 24 104 IPR008913 GO:0008270
Lal5g0298 357 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 236 - -
Lal5g0298 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 240 IPR013083 -
Lal5g0298 357 SUPERFAMILY CHY zinc finger-like 20 93 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0298 Lal-Chr5 2635049 2643780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0298 16 228 C2H2 Transcription Factor Family AT3G18290 40.826 2.32e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0298 K10144 - gmx:100818374 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0298 5 2635049 2643780 Lal5g0298 5 2635049 2643780 ECH