Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0286 ATGGATTTGTACGGTCGAAACCCGATAAGAAATGGGTCTAACCCGGTGAATCAAACCGAATGGAACTCACCTGGGAACAACACTGGTCTCGAAGAATCTATGTGGCAGTTAACACTGACTAGTAGTGAATCGTACCCGGAGCGAACCGGAGCTCCGAATTGTGTTTATTACATGCGAACCGGGTTCTGTGGATATGGTGGAGGTTGTCGTTACAATCATCCTCGTGATCGTGCCGCGGTTGCTGCTGCTGTAAGAGCTACAGGGGAGTACCCAGAACGAGTAGGGGAACCTCCATGTCAGTATTATTTAAAAACTGGAACATGTAAATTTGGTGCATCTTGTAAATTCCACCATCCGAAACATGGAGGTGGTTCGTTAAGCCAAGCTCCACTAAATATTTACGGATACCCATCAAGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAATGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCTGCCTCTGCACCTCAATTTTATCAACAGGTGCAATCACCTACAGTTCCTCTTCCCGACCAGTATGGTGGAGCATCCACAAGCTTGAGGGTGGCAAGGCCTCCTATACTACCTGGTTCATATGTACAAGGAGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAATCCCTATTCGGCACCTGTAAGTCCTGTGTTATCTCCTGGTGCTCAACCTGCTGTTGGGGCTACTTCTCTATACGGAGTGACCCAGTTGAATTCGTCAACATCAGCTTTTGCTAGACCATATACTCCGCTGCCCTCTTCTTCTGGTCCGTCAGGAAGCAACCAGAAGGAACAAGTATTTCCTGAAAGGCCTGGTGAACCTGAATGCCAATATTTTCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATTTCACCATCCTAGGGATCAGGTTGTAACACAACCACTTCTCAACCCCATTGGTCTCCCTCTTCGTCCGGGGGTCCAACCTTGTGCATTTTATTTGCAAAACAATAATTGCAAGTTTGGCTCTGCATGCAAATTTGACCATCCTTGGGGGCCTGTGAGATACACTCCATCAACATCTTCCTTGATTGACACGACAGTTACACCATATCCAGTTGGTTCTTTGCTGTCTACCCTGGCTCCTTCATTCACATCTTCATCGCTTCGACCCGAGTCGATTTCAGGGTCCAAAATGGAATCCTTTTCAACCGTAGTATAA 1269 0.4673 MDLYGRNPIRNGSNPVNQTEWNSPGNNTGLEESMWQLTLTSSESYPERTGAPNCVYYMRTGFCGYGGGCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPSRPGEKECSYYLKMGQCKFGITCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPILPGSYVQGAYGPVLLSPGVVPFPGWNPYSAPVSPVLSPGAQPAVGATSLYGVTQLNSSTSAFARPYTPLPSSSGPSGSNQKEQVFPERPGEPECQYFLRTGDCKFGLACRFHHPRDQVVTQPLLNPIGLPLRPGVQPCAFYLQNNNCKFGSACKFDHPWGPVRYTPSTSSLIDTTVTPYPVGSLLSTLAPSFTSSSLRPESISGSKMESFSTVV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0286 422 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Lal5g0286 422 Gene3D - 40 123 - -
Lal5g0286 422 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Lal5g0286 422 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Lal5g0286 422 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Lal5g0286 422 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Lal5g0286 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Lal5g0286 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Lal5g0286 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Lal5g0286 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Lal5g0286 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Lal5g0286 422 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Lal5g0286 422 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Lal5g0286 422 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Lal5g0286 422 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Lal5g0286 422 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Lal5g0286 422 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Lal5g0286 422 Gene3D - 295 377 - -
Lal5g0286 422 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Lal5g0286 422 PANTHER PROTEIN PHOSPHATASE RELATED 1 398 - -
Lal5g0286 422 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 398 - -
Lal5g0286 422 MobiDBLite consensus disorder prediction 10 29 - -
Lal5g0286 422 MobiDBLite consensus disorder prediction 271 291 - -
Lal5g0286 422 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Lal5g0286 422 MobiDBLite consensus disorder prediction 271 296 - -
Lal5g0286 422 Gene3D - 124 173 - -
Lal5g0286 422 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Lal5g0286 422 MobiDBLite consensus disorder prediction 1 29 - -
Lal5g0286 422 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0286 Lal-Chr5 2549668 2553635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0286 20 422 C2H2 Transcription Factor Family AT5G18550 51.529 1.67e-132 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal5g0286 zf-CCCH 2.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0286 - - lang:109331475 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0286 5 2549668 2553635 Lal5g0286 5 2549668 2553635 ECH