Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0281 ATGGTTGAAACTACGAGTAGAAGGAGAAGGAAACCTTTGATTCTCTCTTCAACAAAAAATCTCATAAATTCTCTATTAACATCTTCTTCATTTTCCCATTTTCATGATTCTTCATCTAAATTTCACTTACCCGTTGGAATTCTCAGATTCAATAACCATTCTTCACTTCTCGCTCTTTCTACTTCTCTTCTCATTAGGCTTTCCATCACTTCTGGTTCACTGGGTCGAAACACAGTTTCAACTGGCCGAAGGGTTACTTATTATCTTTTATTTAGTTTAAGAGTAAACAACAATGATGAAGCTTTAATCCCACTAGGTGTGGTGCTGGTGAAGAATACTGAGATGAACATACAGAGAATTGCAGTGGTGGTTGCTCTTGATCCTCCAGGCACCACCCCGGAACCCCCTTGTGATAATGTGAAGTTACCCTCGTCTCGCTCTTCAAGAATAATGCTTGTACTTCCTTCTTGTGATTTCCCTCATAGTGACCCCTTGTTATTGGATCATGAAGTTGTTTATTTATCTCCTCTTTTAGCCTTTAATCTTAACTTGCACATTTCATGCTTAAAATCCATTCTACAAAATGGGCAAGACTATTTAGCGACCTATTTTAAACCTGAAGGGGCTGATGAGGATACCGCAAAAAGCATTAAGGATTATGATATCAATGTAGAATTGGAACCTCTTGCTCAACCTCCAAGATTTGCCTCTCATTTGAGGGTTTCTTTTGTGAAGATACCAGAAAGTGGCATCCTTGAATCTATTAGAGGAACTTCACCCGTTGAATTGGAAGAACGTCAAGACATGATTGACATGGCATTACAAAAGTACTTTGAAGTCAATAGATATTTGTCAGGAGGAGATGTTTTTGGAATTAACATAAATTGGAATTGCAATTCTACCATTTGCATCCCTTGCAACCAAAACTCGCAAAAGAAAAATAACAACCTTGTCTACTTTAAGGTCATTGCTATGGAACCATCAGATGAACCAATTCTTTGTGTCAATAGAACTTCAACTGCGCTGGTGCTCGGAGGGAGTTCCCCATCTGCCCTTCCTCCAGATTTGTTAATTGCTGGACAAGAAGGGCATGTGCCTTTGCAAGGGGACACAGTAAAGATCTTGGCTTCCATACTTACACCAACTTACTGTCCATCAGCGCTTTCTTCAAAGTTCAGAGTTTCAGTTCTATTATATGGCTTAGCAGGTTGTGGGAAGAGGACTGTTGTTAGATATGTTGCTCATCGACTGGGCTTGCATGTGGTGGAATATAATTGTCACGATCTAATGGCGTCTGATAAGACTTCTGTTGCTCTTGCTCAAGCTTTCAAGACAGCTCGAAGGTACTCACCAACAATACTTCTTTTACGTCATTTTGATGTTTTCCGAGATTCAAATTCACCAGAGGGTTCACTTAATGATCAAAGAGGCAATACATCTGAAGTTGCATCAGTTATCAGGAAATTCACTGAGCCAGTTAGTGAACATGGCGATAGTAACTCCCAATGGAAATCAAACAGTGAATTTGTTGAGAGGAATCCTGAAAAGACTAGCGGGCATCAGATCCTATTGATTGCTGCTGCTGACAGTTCTGAAGGTCTACCTTCGACTATCAGGCGCTGCTTTAGCCATGAAATAAGCATGGGGACTTTGACTGAAGAACAAAGAGCTGAAATGCTATTTCAGTCACTGCAAAGTGTTTCCGAACTCCTCTCTGACACTGATGGATTTGTAAAAGAAATGGTTGGACAAACATCTGGTTACATGCCCAGGGATATGTCTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCCAGAAGCAATGCTGAAGTAGATAAAGGTAGGCTCCAAGATGTAGATGATGATTGTCTTGGTTCTGAAGTGACGGAGGACAAGAACCAGAAAGTTTCTTCTCAGATTGCTGGTAAAGAAGACTTGATGAAAGCTTTAGAACAATCGAAGAAACGAAATGCAACAGCATTGGGCGCTCCAAAGGTTCCAAATGTGAAATGGGAAGATGTTGGTGGACTCGAAGATGTTAAAAAATCAATCCTAGATACTGTTCAGTTACCCCTTCTGCATAAAGATCTGTTTTCATCTGGATTACGTAAGCGGTCTGGTGTTCTTTTGTATGGCCCCCCTGGAACTGGCAAAACGTTATTGGCAAAAGCTGTTGCTACAGAATGCTCCTTAAATTTTCTCAGTGTAAAAGGTCCTGAACTAATCAACATGTACATAGGAGAGTCTGAGAAGAATGTTCGTGACATTTTCCAGAAGGCGAGATCAGCACGTCCATGTGTTATCTTCTTTGATGAGCTCGATTCTCTTGCACCAGCTCGAGGTGCTTCAGGTGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCTTAAGCGATTCTTCACAGGATCTATTTATTATTGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCACTTCTACGTCCTGGTCGATTTGATAAGCTGCTATATGTTGGAGTAAACTCTGATCCATCTTACAGGGAACGGGTCCTGAAAGCACTTACCCGAAAGTTTAAATTGCATGACGACGTTTCACTATACTCAATAGCTAAAAAATGTCCACCAAACTTCACCGGTGCAGACATGTATGCCTTATGCGCAGATGCTTGGTTCCATGCTGCGAAGCGCAAGGTTTTAAGTGAAGATCCAGAGTCTTCCAACCAAGATAATGAAGCAGATTCTGTTGTTGTTGAATACAATGATTTTGTCCAGGTCTTAGTAGAGCTATCACCTTCTCTCTCCATGACTGAGCTTAAGAAGTATGAGCAACTTAGAGATCAGTTTGAAGGCACCTCTAAATAA 2868 0.4097 MVETTSRRRRKPLILSSTKNLINSLLTSSSFSHFHDSSSKFHLPVGILRFNNHSSLLALSTSLLIRLSITSGSLGRNTVSTGRRVTYYLLFSLRVNNNDEALIPLGVVLVKNTEMNIQRIAVVVALDPPGTTPEPPCDNVKLPSSRSSRIMLVLPSCDFPHSDPLLLDHEVVYLSPLLAFNLNLHISCLKSILQNGQDYLATYFKPEGADEDTAKSIKDYDINVELEPLAQPPRFASHLRVSFVKIPESGILESIRGTSPVELEERQDMIDMALQKYFEVNRYLSGGDVFGININWNCNSTICIPCNQNSQKKNNNLVYFKVIAMEPSDEPILCVNRTSTALVLGGSSPSALPPDLLIAGQEGHVPLQGDTVKILASILTPTYCPSALSSKFRVSVLLYGLAGCGKRTVVRYVAHRLGLHVVEYNCHDLMASDKTSVALAQAFKTARRYSPTILLLRHFDVFRDSNSPEGSLNDQRGNTSEVASVIRKFTEPVSEHGDSNSQWKSNSEFVERNPEKTSGHQILLIAAADSSEGLPSTIRRCFSHEISMGTLTEEQRAEMLFQSLQSVSELLSDTDGFVKEMVGQTSGYMPRDMSALIADAGANLFPRSNAEVDKGRLQDVDDDCLGSEVTEDKNQKVSSQIAGKEDLMKALEQSKKRNATALGAPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDPSYRERVLKALTRKFKLHDDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSEDPESSNQDNEADSVVVEYNDFVQVLVELSPSLSMTELKKYEQLRDQFEGTSK 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0281 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 617 IPR027417 -
Lal5g0281 955 SMART AAA_5 705 845 IPR003593 -
Lal5g0281 955 SMART AAA_5 392 552 IPR003593 -
Lal5g0281 955 Gene3D - 366 569 IPR027417 -
Lal5g0281 955 Gene3D - 667 944 IPR027417 -
Lal5g0281 955 PANTHER AAA-FAMILY ATPASE 47 951 - -
Lal5g0281 955 Coils Coil 634 654 - -
Lal5g0281 955 PANTHER PEROXISOME ASSEMBLY FACTOR 2 47 951 - -
Lal5g0281 955 Pfam ATPase family associated with various cellular activities (AAA) 709 841 IPR003959 GO:0005524|GO:0016887
Lal5g0281 955 Pfam ATPase family associated with various cellular activities (AAA) 396 548 IPR003959 GO:0005524|GO:0016887
Lal5g0281 955 Gene3D - 843 929 - -
Lal5g0281 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 668 949 IPR027417 -
Lal5g0281 955 CDD AAA 703 841 - -
Lal5g0281 955 CDD AAA 386 456 - -
Lal5g0281 955 ProSitePatterns AAA-protein family signature. 812 830 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0281 Lal-Chr5 2503497 2512546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0281 675 909 Calmodulin-binding Proteins AT3G56690 39.407 1.03e-39 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0281 K13339 - gmx:100820183 1369.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1119 13 8553444 8553902 Lal5g0281 5 2503497 2512546 PCT