Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0268 ATGGCAAATGCTTCATTTCTCCTAACCTTATACTTATTCATGGTAACCACATCGATCTATCCACATACGATAGTTGCACTCAGCAACCATCGTATACAATGGGCACCAACCACAACCATAACCGCAACCACGTCATATCAAGGCTCGATAGAAGAGTGCATAACTAATGGTGAGTTAGTGATGGACACGGAATCGCATCGGCGCGTCCTAGCAACCTCGAAGTATATAAGTTACCAAGCGCTGCAGCGGAACACCGTGCCATGCAGTCAAAGGGGTTCATCATACTACAATTGCAAGCCAGAAGCAAGTATTAATCCTTACACTCGTGGCTGCAATACCATCACTCATTGCCTTATCATAATAAGAAAACCCAACACTATCACCATGGTTGAAACAAGACACAGTTCATCTTCATCTTCTTCTACTACTTCTTCTTCTCCTACCAAACGCTCTCACTCTTCACCTTCTCATCCCAAACCCAAACGATCAAAGTTATGTGAGGATGATTCAGAAACAAGCTTACCCTCCATTGAAATTGATGATCCAGCCAACAAAACAATACCCCATGAACCTGTTTCATTCAAGGATGTTGTTGTTGATGCCATGTCACCACTGTCTCCTTCTGTCACAATTGAACAAGACCCTATTGTATTGGAGCAAATTTTAGGTGAGACACTGGATGAAATTGTGATGGATGCCGATAAACGTAAGGCTGCTGCCACAGCTGCTGCAGAGGCAGCTGCCGCAGCTGTTGCTGCTAAGGCAGTTGCTGCAGCTGCTGCAGCTAGGGCAGTTGCTGCTGCAGCTGCAGCTAAGGAAGCACTTAGTCAGTTAAAGGAATGCGAGGCAAAATTAACCATGGAAAACCCCAAGGCTTCTTGGGGAAGGCTAATCTCTCAGTGTTCACAGAATCCTCACCTGTACATGTGCAATCCTCTCTTCACTGTTGGTGGCCGTCGGTGTAATCTATTGCTTAAAGATCCAGATATTAGTAATGTTTTGTGCAAGTTAAGCTTGGTTGAGCATGCAGGTTCTTTTTTCGCATTACTAGAAATCACGGGAGATAAAGGTACTGTTCAAGTTAATGGAAAGACTTATCGAAAGAATACCCGTCTGCTTGTTACTGGAGGTGATGAATTAATCTTCAATTCTTCTGGAAAGCATGCTTACATATTTCAGCAGACTGATATACCTGTGAGTATTTTAGAAGCTCATAAGGCTCCAGTAAAGGGATTGTGTTCTGGTGACCCTTCAGCCGTTGCTGGTGCATCAATATTGGCCTCCTTATCTAATCTTCATAAAGATTTTTCTCTCCTTAAACCTCCTACTTTATTTGGCAAGAATATGCAACAGAGCACAGAAATTTCAATGTCATCACTACCTTTTGGCCATAAGGATGATACTCTAGACAATGGAATAAAGGATGCCAGGAATGATAACAAACTTGCTGGAGCTGTTTCAGCTGAGAGGAGTATTCTTGCATCCTCCATTGCGGCTAATGAAAATCCTAGCCTTGACAATATGGACTTGGATGCTATTTTGGGTGAAGATGTGGGGAAGAATAGTGGAGTTACTTGTGAATTAAGGCCTTTGTTGAAGATGCTTGCTGGCTCATGCTCTGAATTTGATTCAAATGGTAGTATTTCCAAAATATTGGAAGAGCGAAGTGAATTAAGAGATCTCCTTAAGGAAGTAGAATTGGCATCGACCGATCGTCAAATATTTAAAGAAAATTTACAACAAGGAATTCTTAATCCTGACAACATTGAGGTGTCATTTGAAAGCTTCCCATATTATCTAAGTGATACAACGAGAAATTCTTTGATTGCTTCTACTTATATTCATCTGAAGTGCAATGGTTTTGGAAAATATGCTTTAGATCTACCGTCCATATTCCCACGGATATTGTTATCTGGCCCCACAGGTTCGGAAATATATCAGGAAACTTTGTCCAAGGGACTTGCTAAACATTTAGGTGTTAGACTATTGACCGTGGATTCTCTTTCACTTCTCAGTGGAACACCATTAAAAGAAGTTGATTCTGCTAAGGGAAGTTCAAGGCCCGACAAAACATGTATGTTTGCAAAGAGAAACACCCAGGTTACCACAGTACAGATTAAGAAACCAGCTTCTAGTGTCAATGCTGATATTATAGGCGGGTCTACATTAAATTCTAAAGGTAAACTGAAGCAAGAAGCTTTTACTGCATCATCAAAAGGTGTTATTCTTAAAGCAGGTGATCGAGTAAAATTTGTTGGTAACTTTCCTTCGTCTATCTCATCACTACAAAGTGATCATTCTAGGGGACCAAGCTATGGCTCCCAGGGCAAAGTTCTCCTTGTTTTCGAAGATAACAGGTCTTCAAAAATTGGAGTTAGGTTTGATAAATCAATTCCGGATGGCAACGATCTTGGGGGCCTTTGTGAAGATGATCATGGTTTCTTTTGTTCCACTAATCATTTACTAAGAGTAGATGGTTTTGGAGGGGATGATTTCGACATGATTAACGATATCTTTGAGGTCGCCTCCAATCAGAGTAAAAGTGGTGCACTAGTAGTGTTCATTAAAGATATAGAGAAGGCGGTAGTTGGGAACTATGATGTTATTAAGAGTAAACTTGAAAGTTTGCCACAAAATGTTGTTGTAATTGGCTCACATACCCATCTGGATAATCCGAAGGACATGACCCAACTTGGCGGCCTTTTGTTTACAAAGTTTGGGAGCAATCAGGCAGCACTACTTGATCTCGCATTTCCGGATAAGTTCAGTAGATTGCGAGGTAGAAGCAAAGAATCGCCCAAAGCTATGAAGCAACTTAGTCGCCTCTTCCCGAATAGATTGACGATAGAGCCGCCTCAGGATGAGGTTTTACTTTCTGATTGGAAGCAACAGTTAGAACATGACATTGAAATTATGAAAGCTCAGTCCAATGTTGCCAGCATTCGCTCAGTGTTCAAAAGAATTGGATTGAAGTGCCCGGACCTTGAGACTTTTATCATTAAAGATCAAGCCCTAACTAATGAAAGTGTGGAAAAAATCATCGGTTGGGCTATAACTCACCATTTTATGCATTTGTCCGAAGGTCCTATCAAAGTATCCAAGCCTGTGATATCTATAGAAAGCATTAAGTATGGGCTGAACATTCTACAGGGCATCCAAAGTGAAAACAAGAACTTGAGTAAATCAATCAAGGATGTGGTTGCTGATAATGAATTCGAGAAAAAATTACTTGCTGATGTTATTCCTCCAACTGATATTGGGGTTACATTTGATGATATTGGGGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTTATGCTTCCTCTTCAAAGGCCTGAATTGTTTAACAAAGGGCAATTGACGAAGCCTTGCAAGGGAATATTACTTTTTGGCCCTCCCGGGACCGGAAAAACAATGCTGGCAAAGGCTGTAGCAACCGAAGCTGGAGCAAATTTTATTAATATTTCAATGTCTAGCATTGCTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAATCTTTTCGGTAGCTAGCAAAATCGCCCCATGTGTTATATTTGTTGATGAGGTTGATAGTATGTTAGGAAAACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAACGAGTTTATGGTTAATTGGGATGGCCTGCGAACAAAAGAGAAAGACCGTGTACTTGTTCTTGCTGCTACAAACAGGCCCTTTGATCTTGATGAGGCTGTTATCCGGAGGCTTCCACGAAGATTGATGGTTAATGTGCCAGATGCTCCAAATAGAGAAAAAATTCTCAGGGTCATCTTAGCCAAAGAAGATTTGGCACCTGATATTGATTTGGAAGCAGTGGCAAACTTGACTGATGGATATACAGGGAGTGACCTAAAGAATTTGTGTGTAACAGCGGCCCAATACCCAATACGAGAGATCTTGGAAAAGGAAAAAAAGGAAAAGAGTTTAGCATTGGCTGAGAACAAACCCTTGCCTAAACTATGTACCAGTGTTGATATTCGTTCCTTAAAGATGAAGGATTTGATCTATGCGCATGAGCAGGTGTGTGCAAGTGTGGCATCGGATTCATCGAATATGACCGAACTACTCCAATGGAATGACCTTTATGGAGAAGGTGGATCAAGAAAAAAGAGAGCTTTGAGCTATTTTATACCAAATTTTACTGACTTTGGTCTTTCCTCAGGCTCTGTGGGGTACCCTCTTGTGGGATTTGTGCTTGTAGGTATAGAGAAAAAAATCAAAGGAAGGGAAATAAATAACACAAACATCATAAAGAGAAAGAAAGGAAGAAGAAGGAAGAAGAAGAAGAAAGATACCCTTAATAACAAGGGATACCCTTAA 4368 0.4087 MANASFLLTLYLFMVTTSIYPHTIVALSNHRIQWAPTTTITATTSYQGSIEECITNGELVMDTESHRRVLATSKYISYQALQRNTVPCSQRGSSYYNCKPEASINPYTRGCNTITHCLIIIRKPNTITMVETRHSSSSSSSTTSSSPTKRSHSSPSHPKPKRSKLCEDDSETSLPSIEIDDPANKTIPHEPVSFKDVVVDAMSPLSPSVTIEQDPIVLEQILGETLDEIVMDADKRKAAATAAAEAAAAAVAAKAVAAAAAARAVAAAAAAKEALSQLKECEAKLTMENPKASWGRLISQCSQNPHLYMCNPLFTVGGRRCNLLLKDPDISNVLCKLSLVEHAGSFFALLEITGDKGTVQVNGKTYRKNTRLLVTGGDELIFNSSGKHAYIFQQTDIPVSILEAHKAPVKGLCSGDPSAVAGASILASLSNLHKDFSLLKPPTLFGKNMQQSTEISMSSLPFGHKDDTLDNGIKDARNDNKLAGAVSAERSILASSIAANENPSLDNMDLDAILGEDVGKNSGVTCELRPLLKMLAGSCSEFDSNGSISKILEERSELRDLLKEVELASTDRQIFKENLQQGILNPDNIEVSFESFPYYLSDTTRNSLIASTYIHLKCNGFGKYALDLPSIFPRILLSGPTGSEIYQETLSKGLAKHLGVRLLTVDSLSLLSGTPLKEVDSAKGSSRPDKTCMFAKRNTQVTTVQIKKPASSVNADIIGGSTLNSKGKLKQEAFTASSKGVILKAGDRVKFVGNFPSSISSLQSDHSRGPSYGSQGKVLLVFEDNRSSKIGVRFDKSIPDGNDLGGLCEDDHGFFCSTNHLLRVDGFGGDDFDMINDIFEVASNQSKSGALVVFIKDIEKAVVGNYDVIKSKLESLPQNVVVIGSHTHLDNPKDMTQLGGLLFTKFGSNQAALLDLAFPDKFSRLRGRSKESPKAMKQLSRLFPNRLTIEPPQDEVLLSDWKQQLEHDIEIMKAQSNVASIRSVFKRIGLKCPDLETFIIKDQALTNESVEKIIGWAITHHFMHLSEGPIKVSKPVISIESIKYGLNILQGIQSENKNLSKSIKDVVADNEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFNKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIASKWFGEGEKYVKAIFSVASKIAPCVIFVDEVDSMLGKRENPGEHEAMRKMKNEFMVNWDGLRTKEKDRVLVLAATNRPFDLDEAVIRRLPRRLMVNVPDAPNREKILRVILAKEDLAPDIDLEAVANLTDGYTGSDLKNLCVTAAQYPIREILEKEKKEKSLALAENKPLPKLCTSVDIRSLKMKDLIYAHEQVCASVASDSSNMTELLQWNDLYGEGGSRKKRALSYFIPNFTDFGLSSGSVGYPLVGFVLVGIEKKIKGREINNTNIIKRKKGRRRKKKKKDTLNNKGYP 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0268 1455 MobiDBLite consensus disorder prediction 1436 1455 - -
Lal5g0268 1455 MobiDBLite consensus disorder prediction 131 188 - -
Lal5g0268 1455 Coils Coil 548 568 - -
Lal5g0268 1455 ProSitePatterns AAA-protein family signature. 1232 1251 IPR003960 GO:0005524|GO:0016887
Lal5g0268 1455 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 244 1393 - -
Lal5g0268 1455 Gene3D - 293 398 - -
Lal5g0268 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1088 1363 IPR027417 -
Lal5g0268 1455 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 244 1393 - -
Lal5g0268 1455 SMART AAA_5 1125 1262 IPR003593 -
Lal5g0268 1455 Gene3D - 1261 1355 - -
Lal5g0268 1455 MobiDBLite consensus disorder prediction 131 153 - -
Lal5g0268 1455 Gene3D - 1087 1365 IPR027417 -
Lal5g0268 1455 SUPERFAMILY SMAD/FHA domain 294 385 IPR008984 GO:0005515
Lal5g0268 1455 Pfam ATPase family associated with various cellular activities (AAA) 1129 1258 IPR003959 GO:0005524|GO:0016887
Lal5g0268 1455 CDD AAA 1127 1259 - -
Lal5g0268 1455 Pfam AAA+ lid domain 1282 1318 IPR041569 -
Lal5g0268 1455 Pfam Rapid ALkalinization Factor (RALF) 58 117 IPR008801 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0268 Lal-Chr5 2338802 2371121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0268 1088 1356 Calmodulin-binding Proteins AT3G56690 38.321 9.12e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0268 - - lang:109330271 2192.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0268 5 2338802 2371121 Lal5g0268 5 2338802 2371121 ECH