Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0262 ATGAGCAGACGTTCGAGTAGAACTATATACGTTGGGAATCTACCTGGTGATATTCGTGAGAGAGAAGTGGAAGATTTGTTTATGAAGTATGGGCACATAGCTCAAATTGACCTAAAGGTTCCCCCAAGGCCTCCTGGCTATGCATTTGTGGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCATCGATTACGGGTGGAGATTGCACATGGTGGACGGGGTCACACATCTTCGAGAGATCGACATAGTGGTTATAGCAATGGACGTGGTGCCGGTGGACGTGGGTTATCCAGGCGTTCTGATTATCGTGTACTTGTCACTGGGTTGCCCTCATCTGCTTCCTGGCAGGATCTTAAGGATCACATGCGGAAGGCAGGGGATGTTTGCTTTGCCCAAGTTTTTAATGATGGAGGAAGAGGTACTACTGGGATTGTAGATTATACAAACTATGATGATATGAAATATGCGATTAAGAAGCTTGATGACACTGAGTTCCGGAATGCATTTTCCAAGGCTTATGTTCGTGTGAAGGAGTATGAGTCAAGGCGGGACTCCTCTAGAAGTCCTAGTCGGGGCCGTTCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGCAGCCGTAGTCACAGCCGAGGCCGGAGCCAAAGCAAATCTCCAAAGGGTAAATCTGCACTCCGTTCACCAGCTAAATCTCCAAATGGTAAATCATCACAACTTTCACCAGCTAAATCTCCACCGAGATCTGTTTCTCGTTCTCATTCAAGATCGAGGTCCCGTTCGAGATCGAGGTCTCGTTCTTTATCTGGGTATGAAGGAATTTCTCTGATACCTTACCTTTTCAAGTATCATTTTCTGACTGATACTGTTATATGGATACTAGCAGCAAACTGGAAATTCGAAATTAGGAACTTGATGGGATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTAGAGGTATGAGCTGGATGTCTTGTGTATCAATTGGGATTTGGAAATCATCACGAATGAGGAATAGGGACAATTTCAGTACACTTTTCGGCTTCAAGATTTGCCAAGCCAATAGGGTGAACTATCTGGATTCGTGGGATTTTGTGGTGCAATCACGATCAAGGTCCAGATCTCCATTGCCTTTGCCCAAAAAGGCGCAGTGCGAGCAAGAGTCCAAGCAGGAGCCGAAGCAAGAGCAGGAGCCGAAGCAAGAGCAGGAGTTTATCTCGATTAATTAG 1260 0.4579 MSRRSSRTIYVGNLPGDIREREVEDLFMKYGHIAQIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEIAHGGRGHTSSRDRHSGYSNGRGAGGRGLSRRSDYRVLVTGLPSSASWQDLKDHMRKAGDVCFAQVFNDGGRGTTGIVDYTNYDDMKYAIKKLDDTEFRNAFSKAYVRVKEYESRRDSSRSPSRGRSHSRGRSYSRSRSRSHSRGRSQSKSPKGKSALRSPAKSPNGKSSQLSPAKSPPRSVSRSHSRSRSRSRSRSRSLSGYEGISLIPYLFKYHFLTDTVIWILAANWKFEIRNLMGFGSIACNSICCRGMSWMSCVSIGIWKSSRMRNRDNFSTLFGFKICQANRVNYLDSWDFVVQSRSRSRSPLPLPKKAQCEQESKQEPKQEQEPKQEQEFISIN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0262 419 MobiDBLite consensus disorder prediction 240 260 - -
Lal5g0262 419 Gene3D - 113 191 IPR012677 -
Lal5g0262 419 CDD RRM1_SF2_plant_like 8 79 - -
Lal5g0262 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 192 IPR000504 GO:0003723
Lal5g0262 419 Gene3D - 2 112 IPR012677 -
Lal5g0262 419 MobiDBLite consensus disorder prediction 203 227 - -
Lal5g0262 419 MobiDBLite consensus disorder prediction 188 274 - -
Lal5g0262 419 PANTHER OS07G0673500 PROTEIN 2 278 - -
Lal5g0262 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 178 IPR000504 GO:0003723
Lal5g0262 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lal5g0262 419 CDD RRM2_SF2_plant_like 113 189 - -
Lal5g0262 419 MobiDBLite consensus disorder prediction 188 202 - -
Lal5g0262 419 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lal5g0262 419 SMART rrm1_1 114 186 IPR000504 GO:0003723
Lal5g0262 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lal5g0262 419 MobiDBLite consensus disorder prediction 380 419 - -
Lal5g0262 419 MobiDBLite consensus disorder prediction 81 107 - -
Lal5g0262 419 MobiDBLite consensus disorder prediction 395 411 - -
Lal5g0262 419 SUPERFAMILY RNA-binding domain, RBD 5 180 IPR035979 GO:0003676
Lal5g0262 419 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0262 Lal-Chr5 2299935 2306503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0262 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.099 4.43e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0262 K12890 - gmx:100796900 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0262 5 2299935 2306503 Lal5g0262 5 2299935 2306503 ECH