Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0254 ATGTATAACCATATGAAAAGAAGAACACTACTACTCTTCTTGGCTCTTGTTACCACTCTTTCCATTGTTTTTCTTGCAACCCATTTCACTAACACCCCAAAAGCAACAACAACAATACACCTTCATTACCAAAGACACATTCAAGTAGCTTATTCAACATGTAAAGGAACACTTTACCCTAACCTATGTGTCTCAACTTTATCCTCATTCAAAGATCTTACCTCAAAAACTGTCCCTCAAACAATAAGCACTCTCCTCAACCACACCATATACGAGGTAAAATTGTCTTCCTCAAACTGCACCAAGTTTAGAAAGAATCTTAAAAATCTCAACAAACTTGAACAAAGAGCACTTGATGATTGTAACAACCTTTTTGATAACACCATTGAGGAACTCAAAACCTCAATTTATGATCTAAACCAAAGCACAATATGTTCCAAACGTTACCATGATTCTCAAACTTTGCTAAGTGGTGCAATGACCAATTTATACACGTGCCTTGATGGTTTTGCTTATAGTAAAGGAAATCACGTAAGAGATAGGATTCAAGAGAAGTTGTATGAGATTTCACATCATATTAGTAACTCATTGGCTATGCTTCAAAAAGTGGATGGAGTGAAGAAAACATCAAAGTTTGAAGTGTTCCCTGAATATGGAAAGATGAAAAATGGTTTCCCTTCTTGGGTGTCATTCAAAGATCGAAAGCTTCTTCAAGCTTCAGTGAATGAGACCAAGTTCGATCTTGTGGTGGCCAAAGATGGCACTGGAAATTTCTCAACTATAGTGGAAGCATTGGCTGCAGCTCCAAACTCCAGCAAAACTAGGTTTGTGATACACATAAAATCAGGGGCTTACTTTGAGAATGTTGAAGTGATAAGGAAGAAAAGCAATTTAATGTTGGTTGGAGATGGAATTGGAAAGACTGTTGTGAAAGCAAGTAGGAATGTTGTGGATGGCTGGACTACTTTCCAATCAGCCACTTTTGCTGTGGTAGGAGATGGATTCATAGCAAAGGGTATAACATTTGAGAACTCAGCTGGGCCAAGCAAGCACCAAGCTGTAGCCTTGAGAAGTGGTGCTGACTTATCAGCCTTTTACCAATGTAGCTTCGTTGCATATCAAGACACACTTTATGTTCATTCATTACGCCAATTCTACCGTGAATGTGACATTTATGGCACCATAGATTTCATTTTTGGCAATGCAGCTGTGGTATTACAAAATTGCAACTTATATGCACGCAAACCCGACCCAAATCAAAAGAATTTGTTCACTGCTCAAGGTAGGGAAGATCCTAATCAAAACACCGGAATATCGATTTTAAATTGTAAGGTTACAGCTGCAGCCGATTTAAACCTGGTTAAATCGACGTTCAAGTCGTACCTAGGCCGACCTTGGAAAATGTATTCAAGAACTGTTTTTCTTCAATCTTACATAGATGATTTGATTGATCCAGCAGGATGGTTAGAATGGAATGGAACATTTGCATTGGATACATTATATTATGGAGAGTATAAAAATAGAGGACCTGGTTCTAATACAAGTGCTAGAGTTACTTGGCCAGGTTATACTATAATCAATAGTTCAATTGAGGCAAGTAAATTCACAGTGGGTCAATTCATACAAGGCAATGAATGGTTGAATTCCACTGATATTCCATTTTTCTCTGATTTGAGTTGA 1680 0.378 MYNHMKRRTLLLFLALVTTLSIVFLATHFTNTPKATTTIHLHYQRHIQVAYSTCKGTLYPNLCVSTLSSFKDLTSKTVPQTISTLLNHTIYEVKLSSSNCTKFRKNLKNLNKLEQRALDDCNNLFDNTIEELKTSIYDLNQSTICSKRYHDSQTLLSGAMTNLYTCLDGFAYSKGNHVRDRIQEKLYEISHHISNSLAMLQKVDGVKKTSKFEVFPEYGKMKNGFPSWVSFKDRKLLQASVNETKFDLVVAKDGTGNFSTIVEALAAAPNSSKTRFVIHIKSGAYFENVEVIRKKSNLMLVGDGIGKTVVKASRNVVDGWTTFQSATFAVVGDGFIAKGITFENSAGPSKHQAVALRSGADLSAFYQCSFVAYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVLQNCNLYARKPDPNQKNLFTAQGREDPNQNTGISILNCKVTAAADLNLVKSTFKSYLGRPWKMYSRTVFLQSYIDDLIDPAGWLEWNGTFALDTLYYGEYKNRGPGSNTSARVTWPGYTIINSSIEASKFTVGQFIQGNEWLNSTDIPFFSDLS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0254 559 Pfam Plant invertase/pectin methylesterase inhibitor 52 199 IPR006501 GO:0004857
Lal5g0254 559 PANTHER PECTINESTERASE 12 556 - -
Lal5g0254 559 PANTHER PECTINESTERASE 12 556 - -
Lal5g0254 559 SMART PMEI_2 45 199 IPR006501 GO:0004857
Lal5g0254 559 Gene3D - 241 558 IPR012334 -
Lal5g0254 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 203 IPR035513 -
Lal5g0254 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 202 IPR035513 -
Lal5g0254 559 CDD PMEI-like_3 52 205 - -
Lal5g0254 559 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 202 IPR006501 GO:0004857
Lal5g0254 559 Pfam Pectinesterase 247 544 IPR000070 GO:0030599|GO:0042545
Lal5g0254 559 SUPERFAMILY Pectin lyase-like 245 556 IPR011050 -
Lal5g0254 559 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0254 Lal-Chr5 2230578 2235678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0254 74 558 Carbohydrate Esterase AT4G02320 55.734 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0254 K01051 - gmx:100813592 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0254 5 2230578 2235678 Lal5g0254 5 2230578 2235678 ECH
Lal13g0499 13 3222437 3227158 Lal5g0254 5 2230578 2235678 PCT