Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0249 ATGGTGTCACTGAAACTTCAGAAGAGGCTCGCTGCTAGTGTCCTCAAGTGTGGAAGAGGAAAAGTTTGGCTTGATCCCAATGAGGGAAATGAAATTTCCATGGCAAATTCTCGTCAAAACATAAGGAAGCTAGTGAAGGATGGGTTTATTATCAGGAAACCTACGAAGATTCACTCTCGCTCTCGTGCCCGAAGAATGAAGGAAGCCAAGAGGAAAGGACGTCATTCCGGATATGGTAAGCGTAAGGGTACAAGGGAAGCAAGACTTCCCACCAAAATCCTTTGGATGAGGAGAATGCGTGTGCTGAGACGCTTGCTTCGCAAGTATCGTGAATCTAAGAAGATTGACAAACACATGTACCATGACATGTACATGAAGGTTAAAGGTAATGTTTTCAAGAACAAGAGAGTTCTAATGGAGAGCATTCACAAGTCTAAGGCTGAGAAGGCCAGAGAGAAGACCTTGTCTGACCAGTTCGAAGCCAAACGTGCCAAGAACAAGGCAAGCAGAGAAAGGAAACATGCCCGCAGGGAGGAGCGTTTGGCACAAGGTCCTGGTGAGAAGCCATCAGTTGCAGCCACTGCTGCACCAGTTACAGCATCACAGCCTGCCCAAGCAACAAAGAAATCGAAGAAGTGA 639 0.4664 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAQGPGEKPSVAATAAPVTASQPAQATKKSKK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0249 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Lal5g0249 212 MobiDBLite consensus disorder prediction 195 212 - -
Lal5g0249 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lal5g0249 212 MobiDBLite consensus disorder prediction 144 212 - -
Lal5g0249 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Lal5g0249 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Lal5g0249 212 MobiDBLite consensus disorder prediction 57 79 - -
Lal5g0249 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Lal5g0249 212 PANTHER RIBOSOMAL PROTEIN L19 1 212 - -
Lal5g0249 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lal5g0249 212 Gene3D - 57 188 - -
Lal5g0249 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 212 IPR039547 GO:0003723|GO:0003735|GO:0022625
Lal5g0249 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Lal5g0249 212 MobiDBLite consensus disorder prediction 144 184 - -
Lal5g0249 212 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0249 Lal-Chr5 2182886 2185287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0249 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.434 1.35e-127 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0249 K02885 - gmx:100818880 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0249 5 2182886 2185287 Lal5g0249 5 2182886 2185287 ECH
Lal5g0249 5 2182886 2185287 Lal18g0425 18 3567162 3569667 LSH