Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0241 AAATTAGATACCTTAGAAATGGTAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGGAAATGGACTGCAGAAGAGGATGAAATCTTGATAAAGTATATTCAGGTCAATGGGGAAGGTTCTTGGAGGTCATTACCAAAAAATGCAGGATTATTAAGATGTGGTAAGAGTTGCAGATTAAGATGGATCAATTACTTAAGAACTGATCTAAGAAGAGGCAACATTTCTGTTGAAGAGGATAGTCTCATTGTTGAGTTGCATGCTTCTTTTGGCAACAGGTGGTCTTTGATAGCGAGTCATTTGCCAGGTAGAACAGACAACGAGATCAAAAACTATTGGAACTCTCACTTGAGCAGAAAGATTTACACCGCCGTCATCACAACAACCGCCACTACGACCACCACCACCACGACCACAGCCACTACCCTGCCAAGAATCATGGATATACCACCAAAGCGAAGAAACGGTAGAACCAGCCGATGGGCTATGAAAAAGAACAAAATCTATGCCTTAAAAACAAAACCTAATAATCATCAAGAGAGTCCAAAACAAAGTTATCAAAGTGTTGTTACTCATAATAAGAATCATGAAGCAGTTCCTCTAGCACCCACTCCATCACTAGAAACTGAGAACTTAACAATGGTAATGGATTTCAGTGAAGAAATTGGTGATGGGTCAAGTAAAGGTTCTTCTCAGCAAGAAGATGAAAATGGAGGAGGTACAATGGTTAATGAACAGTACTGTATAGTGGATGAAGATGCAATAATAAATAACATGTTATGCATTAACGGTGAGAAAGAAAACAGTGGTCACGAGAATTCAGAACAGTACCAAGAAGTTATTAATGGTGGTTGGGGTTTGAATTTTAATGAGATCATGGACACTTGCTTTATGGAACTTGGTGAAGAAATAGAAAATAATAATAATAATAATAATAATAATAATGAACAAACATGTACAAATAGGGAAAGTGGAGAATTATTATGTACTTTTTCTTCTAAGGTTACAGGTTTAGATGATAGCAATAATAATAGTAAGTGGGATTGGGGAAGTGTTATTGAATTGAATGGTAAAGATGATGTGGCAGAATCATGGGAGAAGAAAGAAAACTTACTCACTTGGCTTTGGGAAGATGATGATTGGGGAAAGGATTATAATGAATTTGGAGATATTGATCTAATGCTTGCATGGCTTAGTTCTTGA 1206 0.3715 KLDTLEMVRAPCCEKVGLKKGKWTAEEDEILIKYIQVNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLRRGNISVEEDSLIVELHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYTAVITTTATTTTTTTTTATTLPRIMDIPPKRRNGRTSRWAMKKNKIYALKTKPNNHQESPKQSYQSVVTHNKNHEAVPLAPTPSLETENLTMVMDFSEEIGDGSSKGSSQQEDENGGGTMVNEQYCIVDEDAIINNMLCINGEKENSGHENSEQYQEVINGGWGLNFNEIMDTCFMELGEEIENNNNNNNNNNEQTCTNRESGELLCTFSSKVTGLDDSNNNSKWDWGSVIELNGKDDVAESWEKKENLLTWLWEDDDWGKDYNEFGDIDLMLAWLSS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0241 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Lal5g0241 401 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Lal5g0241 401 MobiDBLite consensus disorder prediction 225 241 - -
Lal5g0241 401 CDD SANT 77 118 IPR001005 -
Lal5g0241 401 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Lal5g0241 401 Pfam Myb-like DNA-binding domain 73 118 IPR001005 -
Lal5g0241 401 Gene3D - 77 122 - -
Lal5g0241 401 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 381 - -
Lal5g0241 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Lal5g0241 401 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Lal5g0241 401 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Lal5g0241 401 Gene3D - 17 73 - -
Lal5g0241 401 SMART sant 72 120 IPR001005 -
Lal5g0241 401 SMART sant 19 69 IPR001005 -
Lal5g0241 401 MobiDBLite consensus disorder prediction 222 242 - -
Lal5g0241 401 CDD SANT 22 67 IPR001005 -
Lal5g0241 401 PANTHER MYB TRANSCRIPTION FACTOR 8 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0241 Lal-Chr5 2123963 2130500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0241 7 195 MYB Transcription Factor Family AT2G47460 60.622 9.63e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal5g0241 Myb_DNA-binding 3.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0241 K09422 - gmx:100788260 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0241 5 2123963 2130500 Lal5g0241 5 2123963 2130500 ECH
Lal3g1365 3 19424510 19428701 Lal5g0241 5 2123963 2130500 LSH
Lal5g0241 5 2123963 2130500 Lal12g0520 12 3685842 3687842 PCT
Lal5g0241 5 2123963 2130500 Lal13g0518 13 3341923 3344824 PCT
Lal12g0520 12 3685842 3687842 Lal5g0241 5 2123963 2130500 PCT
Lal13g0518 13 3341923 3344824 Lal5g0241 5 2123963 2130500 PCT