Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0235 ATGGCAGAGATTATGTTACTAATTGATGATTTGGAATTGCTTTCTGGGATTTCTCGATGTAGAATATGTCATGAAGAAGATTTTAAGAACTCATCATCAAACATGGAATCACCTTGTGCTTGTTCCGGAACCATAAAGTTTGCTCATAGAGATTGTATACAGAGATGGTGCAATGAAAAAGGGAATATAATCTGTGAAATTTGTCTCCAGCAATATGAACCTGGATATATTGCACCTTCAAAGATATCTGAAAAAAATGATGAAGCAATATCTATTAGGAGAGAGGAAGAAGAGTCAAACATGAGAATAGAGGAAAGAGTGGAAGGAGTTGTAATAGAATCTCAATGTAGCTATGCTCCTGATAGAACCGCTTCTTCATGCAGATCACTCGCATTAATTTTCACTATACTCTTGCTTGTGAGAAATCTTTTCTCAACGTGTCCAAATGGAACAGAAGATTACCCATTTTCAATGCTTACAGTTATTATGCTAAAGGCTAGTGGAATTATTATACCCATGTACATAATTATTAAGGTAATCGGAGCAATTCAGAACAATATTCAACACCACCATCAAGATTATTACTATAACATATTAATTTCTGATGGAGATGAAGAAAACCAGTAA 627 0.3445 MAEIMLLIDDLELLSGISRCRICHEEDFKNSSSNMESPCACSGTIKFAHRDCIQRWCNEKGNIICEICLQQYEPGYIAPSKISEKNDEAISIRREEEESNMRIEERVEGVVIESQCSYAPDRTASSCRSLALIFTILLLVRNLFSTCPNGTEDYPFSMLTVIMLKASGIIIPMYIIIKVIGAIQNNIQHHHQDYYYNILISDGDEENQ 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0235 208 ProSiteProfiles Zinc finger RING-CH-type profile. 12 75 IPR011016 GO:0008270
Lal5g0235 208 Pfam Protein of unknown function (DUF3675) 74 180 IPR022143 -
Lal5g0235 208 SMART ringv_2 19 69 IPR011016 GO:0008270
Lal5g0235 208 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 194 - -
Lal5g0235 208 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 194 IPR033275 -
Lal5g0235 208 CDD RING_CH-C4HC3_MARCH 20 68 - -
Lal5g0235 208 Pfam RING-variant domain 20 68 IPR011016 GO:0008270
Lal5g0235 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 78 IPR013083 -
Lal5g0235 208 SUPERFAMILY RING/U-box 19 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0235 Lal-Chr5 2036644 2041157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0235 20 73 C3H Transcription Factor Family AT1G11020 36.842 5.00e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0235 - - gmx:100802379 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0235 5 2036644 2041157 Lal5g0235 5 2036644 2041157 ECH
Lal3g1369 3 19510331 19513725 Lal5g0235 5 2036644 2041157 LSH
Lal5g0235 5 2036644 2041157 Lal13g0527 13 3415963 3418500 PCT
Lal5g0235 5 2036644 2041157 Lal24g0422 24 2996090 2998936 PCT
Lal13g0527 13 3415963 3418500 Lal5g0235 5 2036644 2041157 PCT
Lal24g0422 24 2996090 2998936 Lal5g0235 5 2036644 2041157 PCT