Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0227 ATGTCGAAGAGAAAATTCGGATTCGAAGGTTTCGGCATTAACCGTCAATCAACCTTCGATTTCGAACAATCTCAACCACCTCAACGACTCTACGTTCCTCCAACTTCCCGCCATGGCTCACACGACAATTACGAAGACACCGACCTCGACAACATCGATTACGACGACAACGACGGCGGCGCTGACGGTGGTCTTCGCGGTGGCGATCAAGGTGATGATGAAATTGATCCTTTGGACGCGTTTATGGAAGGAATTCATGAGGAGATGAAGGCGGCGCCACCGCCGAAGGAAAAGGTTGAAGATAGGTTTAACGATGAGGAAGATCCTATGGAGAGTTTTCTGAAGGCGAAGAAGGATTTGGGGTTAACGCTTGCATCGGATGCGTTAAATGCAGGGTATGATTCTGATGAAGAGGTTTATGCTGCTGCTAAAGCTATTGATGCTGGTTTGGTTGAATATGATTCTGATGATAATCCTATTGTTCTTGATAAGAAGAAAATTGAGCCTATACCTGCACTTGATCATAGTTCTATTGATTATGAGCCTTTTAATAAAGATTTTTATGAAGACTCACCTTCAATTTTAGGCATGAGTGAGCAAGATGTAAATGAATATAGGAAGAGTTTGGCTATTCGTGTATCGGGTTTTGTTGTTCCTAAGCCACTAAAGACATTTGACGACTGTGGATTCTCTACCCAGATTATGAGTGCTATTAGAAAGCAAGGATATGAGAAGCCCACATCTATACAATGCCAAGCTTTACCAGTGGTGCTTTCTGGTAGAGATATTATCGGTATAGCGAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGACGAGGGTCCTATAGGAGTGATTTGTGCACCTACTAGAGAATTGGCACATCAAATATTTCTGGAGGCCAAGAAATTTGCAAAATCATATGGTATACGCGTATCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGATCAAAGAACTCAAGTCAGGCTGTGAGATAGTTGTTGCTACCCCTGGGAGATTGATAGACATGTTAAAGTTGAAGGCATTAACAATGACAAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGATTTGAGCCGCAAATAAGGTCCATTGTTGGTCAGATTAGGCCAGATCGCCAAACTTTACTTTTTTCTGCAACAATGCCTCGCAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACGGATCCTATTAGAGTAACAGTTGGGGAGGTGGGAATGGCAAATGAAGATATCACTCAAGTTGTTCATGTAATTCCTTCCGATTCTGAAAAGTTGCCATGGCTTTTGGAGAAGCTCCCTGAAATGATTGATCAAGGTGATACCCTAGTATTTGCTTCCAAGAAGGCCACTGTGGATGAAATTGAATCGCAATTGGCTCTGAGAGGTTTCAAAGTTGCTGCCCTGCACGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTGCAGAAGTTTAAATCTGGCACATACCATGTGCTTATTGCAACTGATGTTGCTGCTCGCGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATCGCAAAAGATATGGACATGCATGTCCATCGCATTGGACGAACAGGCCGTGCTGGTGACAAGGATGGGGTTGCATACACACTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAATTGCCGCTGGCCAGAATGTTTCTGTGGAGTTGATGGATCTAGCTATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAGGAAAAGGAGGAGGGAAAAAAGGCCGAGGGAGAGGCGGCGGCCGTGGTGGTGGTGGCGGCGGACGAGGTGTGCGTGGAGTGGATTTTGGCTTGGGTATTGGATATAATGCAGAGTCGAACAATGTTCCATCATCTAACACAGTTCCAACTCGGTCTACCGCCATAAATTCTCTACGGTCCGGAGTTATGTCACAATTTAGGAGTAACTTCGTTGCTGCTTCATCAAACACTCAAAGTCAAGGATTCACTAAGGATTCAACCATTCCTGCCAAAAGACCAGCACTCGCCGGCTTCGTATCAGGTGGATCAATCGGCGGGGATATAAATACCCATGGGACTACTTCTTCATTCAGTCCTGCTACTACACCCACAGTAAATTCCACTAGTCAAAATTCTGGTCAGAAGAGCACAAACAGTTCCAAGCCTAGAGAAAGGAAAAGGCCATCAGGTTGGGATAGATAG 2307 0.4413 MSKRKFGFEGFGINRQSTFDFEQSQPPQRLYVPPTSRHGSHDNYEDTDLDNIDYDDNDGGADGGLRGGDQGDDEIDPLDAFMEGIHEEMKAAPPPKEKVEDRFNDEEDPMESFLKAKKDLGLTLASDALNAGYDSDEEVYAAAKAIDAGLVEYDSDDNPIVLDKKKIEPIPALDHSSIDYEPFNKDFYEDSPSILGMSEQDVNEYRKSLAIRVSGFVVPKPLKTFDDCGFSTQIMSAIRKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKDEGPIGVICAPTRELAHQIFLEAKKFAKSYGIRVSAVYGGMSKLEQIKELKSGCEIVVATPGRLIDMLKLKALTMTRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVHVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLALRGFKVAALHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSVELMDLAMKDGRFRSKRDAGKGGGKKGRGRGGGRGGGGGGRGVRGVDFGLGIGYNAESNNVPSSNTVPTRSTAINSLRSGVMSQFRSNFVAASSNTQSQGFTKDSTIPAKRPALAGFVSGGSIGGDINTHGTTSSFSPATTPTVNSTSQNSGQKSTNSSKPRERKRPSGWDR 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0227 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 432 IPR027417 -
Lal5g0227 768 SMART helicmild6 482 563 IPR001650 -
Lal5g0227 768 MobiDBLite consensus disorder prediction 721 753 - -
Lal5g0227 768 SMART ultradead3 242 444 IPR014001 -
Lal5g0227 768 MobiDBLite consensus disorder prediction 721 768 - -
Lal5g0227 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 454 603 IPR001650 -
Lal5g0227 768 Pfam Helicase conserved C-terminal domain 458 563 IPR001650 -
Lal5g0227 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 254 429 IPR014001 -
Lal5g0227 768 CDD SF2_C_DEAD 441 573 - -
Lal5g0227 768 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 655 - -
Lal5g0227 768 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 223 251 IPR014014 GO:0003724
Lal5g0227 768 MobiDBLite consensus disorder prediction 16 31 - -
Lal5g0227 768 Gene3D - 431 607 IPR027417 -
Lal5g0227 768 MobiDBLite consensus disorder prediction 1 73 - -
Lal5g0227 768 Pfam DEAD/DEAH box helicase 247 418 IPR011545 GO:0003676|GO:0005524
Lal5g0227 768 MobiDBLite consensus disorder prediction 59 73 - -
Lal5g0227 768 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 46 655 - -
Lal5g0227 768 Gene3D - 188 430 IPR027417 -
Lal5g0227 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 597 IPR027417 -
Lal5g0227 768 MobiDBLite consensus disorder prediction 754 768 - -
Lal5g0227 768 MobiDBLite consensus disorder prediction 610 638 - -
Lal5g0227 768 CDD DEADc_DDX42 234 430 - -
Lal5g0227 768 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 375 383 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0227 Lal-Chr5 1966138 1971000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0227 220 573 Eukaryotic Initiation Factors Gene Family AT3G19760 33.426 7.67e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0227 K12835 - gmx:100814854 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0227 5 1966138 1971000 Lal5g0227 5 1966138 1971000 ECH
Lal5g0227 5 1966138 1971000 Lal18g0413 18 3496453 3501576 LSH