Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0222 ATGGATGCTAAAGATATTCTAGGATTGTCCAAAATTTCATTCCCAGGTTTGGAGAAGAAATCTCGTCCTCACAAAGAATCTCATAGAAAACCAGATGGTATTTCACGTGAGGTATATGCACTTACTGGTGGATTGCCATCTCTTATGCCTTCAATTGATGCCTCTCATTTGAAAAAAAAGCCTCCTTCTGATGAAAAGATCACTTGGCAATGGCTTCCTTTCACTAGTTCCGCTCGTAAAGATAATCTTCAACTTTACCATTGGGTTCGGATAATCAATGGTGTTCCCCCAACGGGAGACTATTCCTTTGCTAAGTATAACAAGTCTGTTGAGATTATCAAATACACAGAGGAGGAGTATGAGAAGTATTTGAAAGATCCTATGTGGACCAAGGAGGAAACAGATCAACTATTTGATTTGTGTGAGAGGTTTGATCTCCGATTTGTTGTAATAGCTGATAGGTTCCCGTCATCTCGGACTGTAGAGGAATTAAAGGATAGGTATTATAGCGTATGTCGGGCTATATTAATTGCTAGAGCTCCATCTCCCGGGCACGTAGCAACACATCCTGTTGTTAAGGAACCATATAATGTTTCACAAGACATAGAGCGAAAACGAGCATTATCCATGGTACTCTCTCAAACAAGGCAACAAGAGCGAAGAGATGAAGAGGTTCTTGTGGAAGCAAAAAGAATAGCCGAGTTACGCATGCCTGCTAAGGCTGCTGAAGAGTCTCAGTTGGCCGTTGCCTCAAATCCCGGTGCAGAAGTTACAGAGAGGACTATCCCTGGTGAAACTGCATCTTCACCAATGGTTGTGTCTTCCACATTAACTGATAATGCAGCGATTCTAGCTTCTCTTCGAACTCTTCGTGTATATTTGAGAACATATGCACTTGAGCAAATGGTGCAAGCTGCAAGCTCTTCTGCTGGACTTCGGACTATAAAACGAGTTGAGCAAACATTGCAAGACCTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGCACAGAGCATCTTGAACTAAGAAAAGAAATACTAACTTTACTGAATCTTCAGAAGCAGGTGCAATATAAAGAGGCTGAAGGTTCATCTTTTCGTGATGGGTCATATGGTGAAGGTTCACCAAGCACGCCAAAGGATCGAACATTTATTCCAGAATTCATGAGCTTTGGAGGGGAAAGGGTTGGCAAAAAGGACCACAAACGAAAGGGACATGGAGCTCCTTCACCATCTGCTGCTCATAAAAGACCTAGAAAAATGAAGGCCTCAGATCTCTAG 1290 0.4225 MDAKDILGLSKISFPGLEKKSRPHKESHRKPDGISREVYALTGGLPSLMPSIDASHLKKKPPSDEKITWQWLPFTSSARKDNLQLYHWVRIINGVPPTGDYSFAKYNKSVEIIKYTEEEYEKYLKDPMWTKEETDQLFDLCERFDLRFVVIADRFPSSRTVEELKDRYYSVCRAILIARAPSPGHVATHPVVKEPYNVSQDIERKRALSMVLSQTRQQERRDEEVLVEAKRIAELRMPAKAAEESQLAVASNPGAEVTERTIPGETASSPMVVSSTLTDNAAILASLRTLRVYLRTYALEQMVQAASSSAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCTEHLELRKEILTLLNLQKQVQYKEAEGSSFRDGSYGEGSPSTPKDRTFIPEFMSFGGERVGKKDHKRKGHGAPSPSAAHKRPRKMKASDL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0222 429 MobiDBLite consensus disorder prediction 366 429 - -
Lal5g0222 429 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Lal5g0222 429 Gene3D - 98 183 - -
Lal5g0222 429 CDD SANT_DMAP1_like 129 172 - -
Lal5g0222 429 PANTHER BNAA04G26950D PROTEIN 2 429 - -
Lal5g0222 429 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 307 370 IPR008468 GO:0005634|GO:0045892
Lal5g0222 429 MobiDBLite consensus disorder prediction 402 420 - -
Lal5g0222 429 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 429 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Lal5g0222 429 MobiDBLite consensus disorder prediction 17 33 - -
Lal5g0222 429 MobiDBLite consensus disorder prediction 1 33 - -
Lal5g0222 429 SUPERFAMILY Homeodomain-like 125 175 IPR009057 -
Lal5g0222 429 SMART sant 125 174 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0222 Lal-Chr5 1900909 1906984 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal5g0222 DMAP1 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0222 K11324 - gmx:100818926 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0222 5 1900909 1906984 Lal5g0222 5 1900909 1906984 ECH
Lal5g0222 5 1900909 1906984 Lal18g0410 18 3463209 3469403 LSH