Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0219 ATGGCATCGGCGGGTGTAGCACCTGCTTCTGGATTAACAGATATGAATGCAAGTTCAGTTGGTGTTGAAAGGTTACCCGATGCGATGAACGACATGAAAATCAGCGATGACAAGGAAATGGAAGCCACTGTGGTAAATGGAAACGGGACTGAAACTGGACATATAATTGTTACTACCATTGGTGGTAAAAATGGACAACCTAAGCAGACAATAAGTTACATGGCTGAGCGTGTCGTTGGACATGGATCTTTTGGTGTAGTTTTTCAGGCAAAGTGCTTGGAGACAGGTGAAACCGTGGCTATAAAAAAGGTACTTCAAGATAAGAGGTACAAGAATCGGGAATTGCAAACCATGCGCCTTCTAGACCACCCGAATGTTGTGTCGTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGATGAGCTTTATCTTAATTTGGTACTTGAGTATGTTCCCGAGACTGTGAACCGGGTGATCAGACACTACAACAAAATGAATCAAAGGATGCCATTGATTTATGTGAAACTTTATTCTTACCAGGTGAACCCTCACACCCACCAACTGAAGATATGTGACTTTGGAAGTGCTAAAGTCTTGGTAAAAGGAGAACCAAACATATCTTACATATGTTCTAGGTACTATAGAGCTCCCGAGCTTATATTCGGCGCAACCGAGTACACTACGGCCGTTGACATCTGGTCAGCTGGTTGTGTACTTGGCGAATTATTGCTTGGCCAGCCTCTCTTTCCTGGTGAGAGTGGAGTAGACCAGCTTGTGGAAATTATCAAGGTCAATGGAATTCATTTGCAGGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACAGAGTTCAAGTTTCCTCAAATTAAAGCTCATCCATGGCACAAGATCTTTTACAAGAGGATGCCACCCGAAGCCGTGGATCTCGTCTCAAGATTATTGCAATACTCTCCAAATCTCCGAAGCACGGCTTTGGAGGCTCTGGTTCATCCATTCTTTGACGAGCTTCGCGATCCAAATACCCGGTTGCCAAATGGGCGTTTCCTTCCTCCACTATTTAACTTCAAAGCCAGCGAGCTTAAGGGAGTTCCCACTGAGATGCTGGTGAAGCTGGCCCCACCTCATGCAAGAAAGCAATGTGCTTTATTTGGATCATAA 1176 0.4379 MASAGVAPASGLTDMNASSVGVERLPDAMNDMKISDDKEMEATVVNGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIRHYNKMNQRMPLIYVKLYSYQVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAVDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVNGIHLQVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFYKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKASELKGVPTEMLVKLAPPHARKQCALFGS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0219 391 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Lal5g0219 391 ProSiteProfiles Protein kinase domain profile. 73 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0219 391 CDD STKc_GSK3 68 342 IPR039192 -
Lal5g0219 391 Gene3D Transferase(Phosphotransferase) domain 1 153 382 - -
Lal5g0219 391 Pfam Protein kinase domain 73 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0219 391 Pfam Protein kinase domain 184 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g0219 391 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 181 - -
Lal5g0219 391 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 181 389 - -
Lal5g0219 391 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Lal5g0219 391 SUPERFAMILY Protein kinase-like (PK-like) 72 366 IPR011009 -
Lal5g0219 391 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 181 - -
Lal5g0219 391 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 181 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0219 Lal-Chr5 1879174 1883615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0219 73 348 MAP Kinase Gene Family AT1G73670 34.277 1.84e-39 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lal5g0219 Pkinase 2.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0219 K00924 - gmx:100788046 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0219 5 1879174 1883615 Lal5g0219 5 1879174 1883615 ECH