Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0214 ATGGAGAACATGGAGGATTGTTGTGCCGTTTGCGCTGAACCGTTGGAATGGGTTTCGTACGGACACTGTTTGCATCGCGATGTGTGTTCCACCTGCGTTTCTCGCCTCCGTTTTATTTGCGACGATCGCCGTTGCTGCATCTGCAAAACCGAGTGCGACGTCGTTTTCGTTACCAAGGCTCTAGGAGACTATACAAGGATGATAAATGACTTTTCAGCCCTGCCATCTAATGTAAGAGAGGGTAAGGTTGGATCATACTGGTACCATGAGGATACAAATGCATATTTTGATGACATGGACCATTACAAGATGATAAAGGCTATGTGCAGGCTGTCATGCAGTGAATGTGAAAAGATGGGGGAACAACCACATGATGCTTCAAGGCGACGTGAAAGGTTTAGGAGTATAGGTCAGCTGAAAGGACACTTATTCCATCGTCATAAGTTGCAAATGTGCAGTTTATGTTTGGAGGGAAGGAAGGTCTTTATATGTGAGCAAAAACTATATACTAGAGCGCAATTGAACCAACACATAAACACAGGTGACTCTGTGGTGGATGGCAGCGAAAGTGAGAGAGGCGGTTTTATGGGGCATCCTTTGTGTGAATTTTGCAGAACCCCATTCTATGGGGACAATGAACTATACACACATATGTCTACTGAACATTATACATGCCATATATGCCAAAGGCAGCACCCAGGACAGTATGAATACTATAAGAATTATGACGACCTAGAGATCCATTTCCGTCAGCAGCACTTCTTATGTGAAGATGAGTCTTGCCTTGCCAAGAAGTTTGTTGTCTTTCAATCTGAAGCAGAGATGAAGATACCGACTAGCTTTCGATACAGACATGGTAATGAACAGAACCAACGCCGTGGAAGAGCTAGCACATTTCGTCGTGATATGTCTGAAAATCAACTTTCTATGGCCATTGAAGCCAGTTTGGAGACAGCTAATGCGGAGCAAATATTTCATGATCCATCAGCATCAAGTAGTGGTCAAGTTGCTGTTGATGATGGGAATGCTGATGTTGATTCTATTGTTCAGCCATTCGAATCATTGGCTACATCAGGTTCTGTACCATCTTCAAGATACCTCCAAGCATTGGGACACAGCTCAATAAGTGCACCTTTGGAAGATTCTTCTTTTCCTCCGCTCGCCACACCTTCCAGCAGTGGCCAGCAGAATTCCAAAAATGAGTTGGAAAGTTCATCTAGTAACACTATGGCAGCACGCTTGCGCCACCATGGCAAAAGAAATGCATCTGTTATTAATTCTGGTCATGCTTGGCCTGCAGCAGGTCGAGTACCGGTACAAACATCAAGTGTCCCTACACAATCTAAACTGTCAACAAATGTTGCTCCTGGAGTGTCACTTAATTCTGGTAAAGTGAAAACAGTAATTAATAGTGGGGCTTCGCCGTCTACTTATGCTAGTTCTATTCAGGCTACCCAGAGAACTGGACATGGACAATGGTCTGCTGGCTCGTTGCTGGAAAAACGTGACAATGGTAAAATTGTTCACTCTACATCTGCTCCAAATCTCACAGAGAGGAACCCGATTCAAGGTTCAATTTCCAATTTTCCTCCAATTTCTGCTGCACAAGTGAACAAGTTACCTGCAAGCAGCCAATCCCTGTTGAATATGGAGAACGTTCACTCTGCTAACAAGTCCTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGATAGATACACAATGTTTAAGGACATATCTGCTCATTTTCGCCAAAGCACAATAGATACAGATACATATCTGGATTATGTGCAGCAGTTTGGCTTATCTCATCTTGTACTTGAGATGGCAAGACTGTGCCCAGATCCTCGGAAGCAGAATGAACTTGTTGAATCTTACAACGCTAGTATGCAAAGAAATGCTTTGCAAGAAAATAGCGGGGTTTGTGGTATCAGTAGCACCCATGGCAAAGATGGTAACGCCTCTAAAAAAGGTAAAGGTAAGTCTCTAGGCGTTAGAGGGAGTAACTCCACGGAGAGATTAGCAGATAACTTTCTAAGCACTGTACATCAACTACAATCAAGTTATAAACCTTCAGAAGATAACTTGGAGGTACTATCAAGGGGTGATTACCAAACCAACAAAGGCAAATCAAAAAGCGAGCAGCAAATCAATACAAATTCTGGTAGTCAACTTATAACAAAGCAAAATGGGCAGAGTGAAACATCAACTGGCAGTTTATCTAGTCAAAATAGAGAGGGTGGTGGTGGTGGAAGCAAGCAACACAAGAAAGCATCCAAATTCCTCAAAGTGCGCCTTGGTGATGGTTCTGTTTCAGCACTTCTGGATCGTGGACATTCACACACTGAACCAGATCCTGGAAAAACAAGTGGTCTAGATGGTGGCAACAATGACTTGCCTGCGCGAGGTGTTTGGCGAAAAGGAGGTGCCCAGAAACTCTTTTCCTAA 2454 0.4344 MENMEDCCAVCAEPLEWVSYGHCLHRDVCSTCVSRLRFICDDRRCCICKTECDVVFVTKALGDYTRMINDFSALPSNVREGKVGSYWYHEDTNAYFDDMDHYKMIKAMCRLSCSECEKMGEQPHDASRRRERFRSIGQLKGHLFHRHKLQMCSLCLEGRKVFICEQKLYTRAQLNQHINTGDSVVDGSESERGGFMGHPLCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQQHFLCEDESCLAKKFVVFQSEAEMKIPTSFRYRHGNEQNQRRGRASTFRRDMSENQLSMAIEASLETANAEQIFHDPSASSSGQVAVDDGNADVDSIVQPFESLATSGSVPSSRYLQALGHSSISAPLEDSSFPPLATPSSSGQQNSKNELESSSSNTMAARLRHHGKRNASVINSGHAWPAAGRVPVQTSSVPTQSKLSTNVAPGVSLNSGKVKTVINSGASPSTYASSIQATQRTGHGQWSAGSLLEKRDNGKIVHSTSAPNLTERNPIQGSISNFPPISAAQVNKLPASSQSLLNMENVHSANKSLVEKIRGALDFDEDRYTMFKDISAHFRQSTIDTDTYLDYVQQFGLSHLVLEMARLCPDPRKQNELVESYNASMQRNALQENSGVCGISSTHGKDGNASKKGKGKSLGVRGSNSTERLADNFLSTVHQLQSSYKPSEDNLEVLSRGDYQTNKGKSKSEQQINTNSGSQLITKQNGQSETSTGSLSSQNREGGGGGSKQHKKASKFLKVRLGDGSVSALLDRGHSHTEPDPGKTSGLDGGNNDLPARGVWRKGGAQKLFS 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0214 817 ProSiteProfiles Zinc finger RING-type profile. 8 49 IPR001841 -
Lal5g0214 817 MobiDBLite consensus disorder prediction 377 411 - -
Lal5g0214 817 MobiDBLite consensus disorder prediction 706 751 - -
Lal5g0214 817 PANTHER ZINC FINGER PROTEIN 598 4 816 IPR044288 GO:0061630|GO:0072344
Lal5g0214 817 SMART c2h2final6 223 253 IPR013087 -
Lal5g0214 817 SMART c2h2final6 111 147 IPR013087 -
Lal5g0214 817 SMART c2h2final6 199 222 IPR013087 -
Lal5g0214 817 MobiDBLite consensus disorder prediction 474 493 - -
Lal5g0214 817 PANTHER EBR1 4 816 - -
Lal5g0214 817 MobiDBLite consensus disorder prediction 474 497 - -
Lal5g0214 817 MobiDBLite consensus disorder prediction 641 670 - -
Lal5g0214 817 MobiDBLite consensus disorder prediction 706 817 - -
Lal5g0214 817 CDD RING-HC_ZNF598 8 49 IPR041888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0214 Lal-Chr5 1842893 1848708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0214 4 817 C2H2 Transcription Factor Family AT3G62240 49.078 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0214 K22381 - gmx:100780426 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0214 5 1842893 1848708 Lal5g0214 5 1842893 1848708 ECH
Lal3g1404 3 19962715 19967768 Lal5g0214 5 1842893 1848708 LSH
Lal5g0214 5 1842893 1848708 Lal18g0404 18 3426077 3431250 LSH