Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0212 ATGAACGGGAAAATAATTGTTTCTGCTGTTTCTCTTATTCTAGTTGTAGGTGTTGCTATTGGTGTTGTTGTTGCTGTTCATAAAAATGGTAGTGACCCTGAAGTTAAAGCTCAACAAAAATCTGTGATGATCATATGCAAAAACACAAATGACCCTAAATATTGTAGTGAAGTTCTTGGCTCTGCTCATGTTCCTAATGCTGGAGACCCTAAGTCATACCTCACTGTCCTTGTGAATTCAACCACTGAGAAAGTCATCAAGGCCTTCAACCTAACCGACAGGCTCTCATCTGAGCATGGAGGGAAAGACAATGGTGTGAAGGTAGGGCTTGATGCATGCAAACACATGTTGGAATTAGCATTGGACAGTCTTGAATTATCTTCTAACTTGGTTCGTGATAATAACATTCAAACAATAAATTTCCAAATCCCTGATTTCAGTAACTGGTTAAGTGCTGTTATTTCATACAAACAAACATGTCTTGAAGTATTTGATGATGACAAAGAAGAAGAGAAAAAGATCAAAGAAAAATTGGATTCAGAAAGTTTAGAACATATTAAGAAAATCACAGCCATTGGGTTAGACATTATAGCTGATTTAACAAAAATTCTTGAAGAATTCAGCATAAAGTTAGATTTGAAACCTGTTTCTAGAAGCCTTCTTAATGTTGAAGTTGATGAAGAACAAACACCAACATGGTTTTCTCATGAAGATCGTAAACTTTTAGGAAGAGGGTGGAGAAATAGAATTAACAAACCTAATGTTATTGTTGCTAAAGATGGTAGTGGTCAATTTAAGACTATTAAAGAAGCTATTGATTCATACCCTAAGGGATTTAAAGGAAGATATATTATATATGTTAAAGCTGGGATTTATGAAGAGTTCATTACTGTTCCAAAATCTTCTGTTAATGTTCTTATCTATGGTGATGGTCCTCAAAGAACTGTTGTTACTGGTAAGAGGAGTTTTGGTGCTGGTATTAAGACAATGCTCACTGCCACTTTCTCCAATGAGGCACCTGGATTCATTGCAAGGTCAATGAAATTTGAGAACTCAGCTGGTCCTCAAAATCACCAAGCTGTTGCATTCAGAAACACTGGAGATGGTTCAGCCGCAGTTGGTTGTCATTTTGATGGTTTCCAAGACACTTTATATGTTCACGCCAACAGACAATTCTATCGCAATTGCGAAATCTCGGGAACTATCGACTTCATATTCGGTACCTCTAGAACATTAATCCAAAATAGCAAAATCATCGTGAGAAAACCCGAAGTTGAAAGAGGCCAATTTAACACGGTCACCGCAGAAGGAACCGAAATAAGCACTATGGGAACCGGAATCGTTATCCAAAATTGCCAAATCGTCCCCGATGCGGCGTTGTACCCAATAAGGTTTCAAGTCAAATCATATTTAGGTAGACCATGGAAAAAATGTTCAACAACAGTAGTTATGGAATCAGTTATTGGTGACTTTCTTAACCCAGAGGGTTGGGCACCTTGGGCTGGGTCAGCATTTCTAGACACATTGTACTATGCTGAGTATGCTAACACTGGACCTGGTGCTGATGTTAAAGGAAGGGTCAACTGGAAGGGTTACCATGGTGTTCTAAGTAAAGCTGAAGCTCAAAGATTCACTTCTGAAGTGATACTAAAAGCTGGAAGTGATTCAAGTACTAGTTGGTTAAGGAAAGTTCATGTTCCTAATTATCTTGGTTTTGCAAGGCCTTGA 1728 0.3808 MNGKIIVSAVSLILVVGVAIGVVVAVHKNGSDPEVKAQQKSVMIICKNTNDPKYCSEVLGSAHVPNAGDPKSYLTVLVNSTTEKVIKAFNLTDRLSSEHGGKDNGVKVGLDACKHMLELALDSLELSSNLVRDNNIQTINFQIPDFSNWLSAVISYKQTCLEVFDDDKEEEKKIKEKLDSESLEHIKKITAIGLDIIADLTKILEEFSIKLDLKPVSRSLLNVEVDEEQTPTWFSHEDRKLLGRGWRNRINKPNVIVAKDGSGQFKTIKEAIDSYPKGFKGRYIIYVKAGIYEEFITVPKSSVNVLIYGDGPQRTVVTGKRSFGAGIKTMLTATFSNEAPGFIARSMKFENSAGPQNHQAVAFRNTGDGSAAVGCHFDGFQDTLYVHANRQFYRNCEISGTIDFIFGTSRTLIQNSKIIVRKPEVERGQFNTVTAEGTEISTMGTGIVIQNCQIVPDAALYPIRFQVKSYLGRPWKKCSTTVVMESVIGDFLNPEGWAPWAGSAFLDTLYYAEYANTGPGADVKGRVNWKGYHGVLSKAEAQRFTSEVILKAGSDSSTSWLRKVHVPNYLGFARP 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0212 575 Gene3D - 249 572 IPR012334 -
Lal5g0212 575 PANTHER PECTINESTERASE 3 572 - -
Lal5g0212 575 PANTHER PECTINESTERASE 3 572 - -
Lal5g0212 575 SMART PMEI_2 37 196 IPR006501 GO:0004857
Lal5g0212 575 Pfam Plant invertase/pectin methylesterase inhibitor 45 192 IPR006501 GO:0004857
Lal5g0212 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 198 IPR035513 -
Lal5g0212 575 Pfam Pectinesterase 254 550 IPR000070 GO:0030599|GO:0042545
Lal5g0212 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 197 IPR006501 GO:0004857
Lal5g0212 575 CDD PMEI-like_3 45 202 - -
Lal5g0212 575 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Lal5g0212 575 SUPERFAMILY Pectin lyase-like 252 547 IPR011050 -
Lal5g0212 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0212 Lal-Chr5 1829651 1832106 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0212 1 572 Carbohydrate Esterase AT2G47030 39.444 3.57e-134 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0212 K01051 - gmx:100781507 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0212 5 1829651 1832106 Lal18g0398 18 3380160 3382263 LSH
Lal5g0212 5 1829651 1832106 Lal12g0544 12 3890751 3892787 PCT
Lal5g0212 5 1829651 1832106 Lal13g0552 13 3593171 3595285 PCT
Lal24g0446 24 3136250 3138178 Lal5g0212 5 1829651 1832106 PCT