Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0211 ATGAAGAGCAAAATCATCGCTTATGCGGTTTCCCTCATTCTTGTGGTAGGTGTTGTCATTGGTGTTGTTATGAACAAAGACAACATGAATGACAATCCTCAATTGAACTCACACAATAAGGCTGTAACAATGTTATGTAATGATGCAGATGATAAAAAACTTTGCCATGATGTTCTTAAACCAGTTGGTAACTCTGAAAACCCTAAGGAATATGTTGAAATTGTGGTGAAAACTACAATGGAAAGTGTCATTAAGGCCTTTAATATGAGTGATAGGTTAACAATTGAGCATGGTAAAAGTAACCCTAGCGTCAAAATGGCCCTTGATGATTGCAAAGATTTGTTGCAATCTGCAATCCATGAACTCGAGGCGTCGGGTGTTTTCGTTCGTGATGGAAACATTCGAGATGTTCTAACACATTCCGCCGAACTCAAAAATTGGTTGGGTGCTATAATTGCCTACCAACAATCTTGCCTTGATGGCTTCGACACAGATGGAGAAAAGAAGATCCAAACACAATTGAATACAGGTAGCTTGGACAATGTTGGAAAGCTTAGTGGATTAGCTCTTGATATTGTAACTGGGATTTCAAAAATGCTTTCTTCATTAAACCTTGACTTGAATTTGAAACCTGCCTCAAGAAGGCTTCTTGAGGTGGATCATGAAGGGTACCCTACATGGTTCTCAACTTCTGACCGTAAGCTTTTGGCTACTAAATCTGAAGTTGGACTTGTACCCCATGCAATTGTTGCTAAGGATGGAAGTGGGAAATATAAGACTATTTTAGATGCTATTAACTCATATCCCAAAGGACACCAAGGTAGATATTTAATCTATGTTAAGGTGGGTGTATATAATGAGTACATTGATGTTGATTACATGAAGCCCAATATTTTGTTATATGGTGATGGCCCTTCAAAGACCATAATCACTGGCCGCAAAAACTTTAACGAGGGTGTCAAGACAATGAGAACAGCCACATTCGCCACCAATGCTGATGGTTTCATTGCAAAGGGAGTTACATTCGAGAACACGGCCGGTGCCATCGGCCACCAAGCCGTGGCACTTCGCGTACAAGGTGATCGTTCAGCTTTCTTCGATTGCGCAATTCGTGGTTATCAAGACACCCTATACACTCATGCTCACCGTCAATTCTACCGCAATTGCGAAATCTCAGGCACAATCGACTTCATCTTTGGCTATGCCTCAGCCCTAATCCAAAACTCTAAGATTATAGTGAGGAAACCAGGTCCAAACCAATCAAACATTGTTGTAGCAGATGGCACAGATCAAAAGAACATGCCTACAGGAATAGTCCTTCACAATTGTGAAATCATCCCAGAAAGTGCACTACAAGTTGATAGGTTAAAAGTTAAGACTTATTTGGCTAGACCATGGAAATCATACTCTAAAGCAGTGTTCATTGAGAATGTGATTGGTGACCTAATTCAGCCAGAAGGCTATATTCCTTGGGCTCCTGAACCTAACACTCAATTCTCTTACTTTGCTGAGTTTGGTAACACTGGACCTGGTGCAAGTACTCATGCTAGGGCTAAGTTTTCCAAAGGACAAATTAGTAAGCAAGAAGCTGAAAAATACATAGCTGAACGTTGGATCCAAGCTAGTACATGGTTGCCTGCAACTGGCATTCCTTTTGATAGTGGCTTCACCAAGAAATAG 1680 0.4077 MKSKIIAYAVSLILVVGVVIGVVMNKDNMNDNPQLNSHNKAVTMLCNDADDKKLCHDVLKPVGNSENPKEYVEIVVKTTMESVIKAFNMSDRLTIEHGKSNPSVKMALDDCKDLLQSAIHELEASGVFVRDGNIRDVLTHSAELKNWLGAIIAYQQSCLDGFDTDGEKKIQTQLNTGSLDNVGKLSGLALDIVTGISKMLSSLNLDLNLKPASRRLLEVDHEGYPTWFSTSDRKLLATKSEVGLVPHAIVAKDGSGKYKTILDAINSYPKGHQGRYLIYVKVGVYNEYIDVDYMKPNILLYGDGPSKTIITGRKNFNEGVKTMRTATFATNADGFIAKGVTFENTAGAIGHQAVALRVQGDRSAFFDCAIRGYQDTLYTHAHRQFYRNCEISGTIDFIFGYASALIQNSKIIVRKPGPNQSNIVVADGTDQKNMPTGIVLHNCEIIPESALQVDRLKVKTYLARPWKSYSKAVFIENVIGDLIQPEGYIPWAPEPNTQFSYFAEFGNTGPGASTHARAKFSKGQISKQEAEKYIAERWIQASTWLPATGIPFDSGFTKK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0211 559 SUPERFAMILY Pectin lyase-like 248 554 IPR011050 -
Lal5g0211 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 197 IPR035513 -
Lal5g0211 559 PANTHER PECTINESTERASE 4 556 - -
Lal5g0211 559 Pfam Pectinesterase 248 541 IPR000070 GO:0030599|GO:0042545
Lal5g0211 559 Pfam Plant invertase/pectin methylesterase inhibitor 42 192 IPR006501 GO:0004857
Lal5g0211 559 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 194 IPR006501 GO:0004857
Lal5g0211 559 PANTHER PECTINESTERASE 4 556 - -
Lal5g0211 559 Gene3D - 243 556 IPR012334 -
Lal5g0211 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 196 IPR035513 -
Lal5g0211 559 CDD PMEI-like_3 45 198 - -
Lal5g0211 559 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Lal5g0211 559 SMART PMEI_2 37 192 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0211 Lal-Chr5 1823934 1826219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0211 4 556 Carbohydrate Esterase AT3G62170 38.644 9.42e-132 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0211 K01051 - gmx:100808559 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0211 5 1823934 1826219 Lal24g0446 24 3136250 3138178 PCT
Lal12g0545 12 3895575 3897775 Lal5g0211 5 1823934 1826219 PCT
Lal13g0553 13 3597638 3600108 Lal5g0211 5 1823934 1826219 PCT