Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0208 ATGGATCCTGAGAATGGTGAAGAACATAAGCATGAAGAGACAAGTTCAGCAGCACCAGAAAATCATCCTTCAGAAACCAACACAAATGGTGAAAATAGTAAACAAAAAGAAAAAGCTGAAACAGTTCCATATTTCAGGTTATTTTCATTTGCAGATTCTACTGATATTATGTTAATGGTTGTTGGAACCATTGGAGCTATTGGAAATGGTTTAGCAATGCCACTTATGACATTACTTCTTGGCCAAGTTATTAATACCTTTGGAAGTAACCAAACTAACAACACCAATGTTGTCCATGAAGTTTCCAAGATTTGTCTAAAGTTTGTATACTTAGCAATTGGCACTGGTATTGCAGCATTCCTCCAGGTGGCTAGCTGGATGGCCACAGGGGAAAGACAAGCTGCTAGAATAAGAGGCTTGTATTTGAAAGCTATACTAAGACAAGACATTAGTTTCTTCGATATGGAAACTAACACCGGAGAGGTTATAGGGCGAATGTCGGGTGACACTGTACTCATACAAGATGCCATGGGTGAGAAGGTTGGAAAGTTTATGCAGCTAATGTCAGCATTTATAGGAGGATTTGTGATAGCTTTTGTCAAAGGGTGGCTTCTTACTCTTGTCTTGATGTCCACCATTCCACTTCTAGTAGTGTCCGGCGCTACTATGGCGCTTGCCATAGGAAAGACATCGTCAAGAGGTCAAAAAGCTTATGCAAAAGCGGCAAATCTAGTTGAACAGACAATTGGCTCAATCAGAACTGTTGCATCCTTTACCGGGGAAAAGCAAGCAGTATCTAGTTACAGCACATTTCTTGAAGATTCATACAAATCAGGAGTTCAAGAAGGTTTCGTATCCGGAATGGGTCTTGGCACGATTATGTTCTTTATTTTCTGCCTTTATGCTTTGGCTGTATGGTATGGCGCAAAGTTGATCATGGAAAAAGGATATGATGGTGGTAGGGTGATCAATGTGATTATCGCTGTGTTAACTGCTTCCATGTCTCTTGGCCAGGCATCCCCTTCCATGAGTGCTTTTGCTGCAGGTCAAGCAGCGGCTTATAAAATGTTTCAGACGATTGAGAGAAAGCCGGATATAGATGCTTATGACCCAAATGGAAAAACTATAGAGGATATTCATGGTGAAATAGAGTTAAGGGATGTTTATTTCAGTTATCCAGCTAGACCTGAGGAATTGATATTCAATGGTTTCTCTCTTCAAATATCTAGTGGTTCCACTACAGCATTAGTAGGACAAAGTGGAAGTGGAAAGTCTACAGTCATCAGTTTGATAGAAAGATTCTACGATCCACGGGCAGGTGAAGTTCTTATCGATGGCATAAACGTTAAGGAATTTCAGATTCGATGGATCCGAGGAAAAATTGGCCTTGTCAGCCAAGAGCCAGTGTTGTTTGCATCCAGCATTAAGGATAATATTGCATATGGAAAAGAGGGAGCAACGGTTGAAGAGATAAGAGCTGCAGCTGAACTTGCCAATGCTGCAAAGTTCATTGATAAATTGCCACAGGGATTGGACACAATGGTTGGTGAGCATGGAACTCAGCTATCCGGCGGACAGAAGCAGCGCATTGCCATTGCCAGAGCAATCCTGAAAGATCCAAGAATTCTACTTCTCGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAAAGGGTAGTGCAAGAAGCACTAGACAGGATCATGGTCAACAGAACCACTGTTGTTGTAGCACATCGCTTGAGCACGGTGAGGAATGCTGATATGATAGCTGTTATCCAAAGCGGGAAAATGGTTGAAAAAGGAACACACATAGAACTACTCAAGAATCCTGGTGGAGCTTACTCTCAACTTATACGCTTACAAGAAGAAAGGAATGAATCAGAAGAAAGTGCAGACCATCAAAACAAGAGAGAACTTTCATCGGGATCCCTTAAACATTCGAGTCGACCGGGGTCACTTAGAAGATCAGGATCATCTTTGGGGAATAGTAGCCGCCACTCTTTTTCAGTTTCGTTTAGTTTACCAACAGGAGTTAGCATCCCTGGTCCTGAATCTGAACATTCACAAACCAAAGAACAACCAGGAAAGGTTCCAATTCGACGCCTTGCTGCCCTCAACAAGCCAGAGATTCCAGTGCTTCTGATTGGATGTGTAGGCTCCATAGCAAATGGTGCTATATTTCCAATATTTGGGTTATTGCTTTCCACTGTCATCAAAATATTTTATGAACCATTTCATGAGCTGAAAAAGGATTCCAAATTTTGGTCACTAATGTTTGTGGCCCTTGGACTTGCGTCGTTAGTAGCAATTCCAACCCGAATGCACTTTTTCTCTGTCGCTGGAAGTAAGCTAATCCAACGTATCAGGCTAATTTGTTACGAAAAGGTGATCAACATGGAGGTTGGTTGGTTTGATGAACCTGCGAACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAACCGATGCTGCATTCGTGCGTGCCCTTGTTGGTGATGCACTCGGACTATTGGTTGAAAATATAGCAACAGCATTGACAGGTTTGATTATTGCTTTCACCGCGAGCTGGCAGTTGGCATTTATTGTTGTTGTCTTCATTCCCTTCATTGGACTCAATGGATATATACAAATTAAATTCATGAAGGGGTTCAGTGGAGATGCAAAGAAAATGTATGAAGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTAGCTTCTTTTTGTTCTGAAGAGAAGGTTATGGAACTATACAGGAAGAAATGTGAAGGTCCCATGAAAGCAGGGATTCGACAAGGCTTGATCAGTGGAACAGGATTTGGAGTTTCATTTTTCTTACTATTTTGTGTCAATGCACTATGCTACTATGTTGGAGCGAGATTCGTGGATGCAGGAAACGCAACATTCTCAGATGTTTTTCGGGTTATCTTAGCTTTAACTTTTACAGCTAACGGAATTTCCCAATCAAGTTCTCTGGCTCCTGATTCTAGTAAAGCAAAGTCAGCTATTGTGTCGATTTTTGGAATAATCGATAGGAAGTCTAAGATAGATCCAAGTGATGAGTCCGGTACAAGGCTAGATAGCATAAGGGGAGAAATTGAGCTTCGCCATGTAAGCTTTAAGTACTCATCTAGGCCAGATATTCCGATTTTTCGAGACCTTAGCTTGACTATCCATTCTGGCATGACAGTGGCCCTTGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTGATTTCCTTGTTACAAAGATTTTATGACCCTGATTCTGGTCATATTACACTTGATGGGGTAGATATTCAGAATTTACAGCTCAAATGGTTAAGGCAACAAATGGGACTTGTTAGCCAAGAACCAGTATTGTTCAATGACACTATTCGCGCCAATATTGCGTATGGAAAAGGAGGCAATGCTACTGAAGCAGAAATTATAGCTGCAGCAGAATTGGCCAATGCCCATAGTTTTATTAGTGGATTACAACAGGGATATGATGCTATAGTTGGAGAGAGGGGAATACAATTATCTGGTGGACAAAAGCAAAGGGTAGCCATTGCACGTGCTATAATTAAAAGTCCAAAGATATTGCTACTAGATGAGGCCACAAGTGCATTAGATGCAGAATCAGAGAGAGTTGTTCAAGATGCATTAGACAGAGTAATGGTGAATAGAACTACTGTGGTTGTGGCACATCGTTTATCTACAATAAAGAATGCAAATGTCATTGCAGTGATGAAAAATGGAGTTATTGTTGAGAAAGGAAGACATGACACACTGATAAACATTGAGGGTGGATATTATTCTTCCTTAATACAACTTCATGCAACTACTTCAACTGTATGA 3843 0.4122 MDPENGEEHKHEETSSAAPENHPSETNTNGENSKQKEKAETVPYFRLFSFADSTDIMLMVVGTIGAIGNGLAMPLMTLLLGQVINTFGSNQTNNTNVVHEVSKICLKFVYLAIGTGIAAFLQVASWMATGERQAARIRGLYLKAILRQDISFFDMETNTGEVIGRMSGDTVLIQDAMGEKVGKFMQLMSAFIGGFVIAFVKGWLLTLVLMSTIPLLVVSGATMALAIGKTSSRGQKAYAKAANLVEQTIGSIRTVASFTGEKQAVSSYSTFLEDSYKSGVQEGFVSGMGLGTIMFFIFCLYALAVWYGAKLIMEKGYDGGRVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFQTIERKPDIDAYDPNGKTIEDIHGEIELRDVYFSYPARPEELIFNGFSLQISSGSTTALVGQSGSGKSTVISLIERFYDPRAGEVLIDGINVKEFQIRWIRGKIGLVSQEPVLFASSIKDNIAYGKEGATVEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIQSGKMVEKGTHIELLKNPGGAYSQLIRLQEERNESEESADHQNKRELSSGSLKHSSRPGSLRRSGSSLGNSSRHSFSVSFSLPTGVSIPGPESEHSQTKEQPGKVPIRRLAALNKPEIPVLLIGCVGSIANGAIFPIFGLLLSTVIKIFYEPFHELKKDSKFWSLMFVALGLASLVAIPTRMHFFSVAGSKLIQRIRLICYEKVINMEVGWFDEPANSSGAIGARLSTDAAFVRALVGDALGLLVENIATALTGLIIAFTASWQLAFIVVVFIPFIGLNGYIQIKFMKGFSGDAKKMYEEASQVANDAVGSIRTVASFCSEEKVMELYRKKCEGPMKAGIRQGLISGTGFGVSFFLLFCVNALCYYVGARFVDAGNATFSDVFRVILALTFTANGISQSSSLAPDSSKAKSAIVSIFGIIDRKSKIDPSDESGTRLDSIRGEIELRHVSFKYSSRPDIPIFRDLSLTIHSGMTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVDIQNLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIIAAAELANAHSFISGLQQGYDAIVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNANVIAVMKNGVIVEKGRHDTLINIEGGYYSSLIQLHATTSTV 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0208 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1035 1272 IPR003439 GO:0005524
Lal5g0208 1280 MobiDBLite consensus disorder prediction 644 668 - -
Lal5g0208 1280 ProSitePatterns ABC transporters family signature. 522 536 IPR017871 GO:0005524
Lal5g0208 1280 Coils Coil 617 637 - -
Lal5g0208 1280 MobiDBLite consensus disorder prediction 1 38 - -
Lal5g0208 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 714 1000 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g0208 1280 CDD ABC_MTABC3_MDL1_MDL2 1035 1268 - -
Lal5g0208 1280 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 11 1276 - -
Lal5g0208 1280 Pfam ABC transporter transmembrane region 60 334 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g0208 1280 Pfam ABC transporter transmembrane region 713 984 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g0208 1280 Gene3D ABC transporter type 1, transmembrane domain 105 1009 IPR036640 GO:0005524|GO:0016021
Lal5g0208 1280 MobiDBLite consensus disorder prediction 1 18 - -
Lal5g0208 1280 SMART AAA_5 410 582 IPR003593 -
Lal5g0208 1280 SMART AAA_5 1062 1255 IPR003593 -
Lal5g0208 1280 Pfam ABC transporter 402 550 IPR003439 GO:0005524
Lal5g0208 1280 Pfam ABC transporter 1054 1203 IPR003439 GO:0005524
Lal5g0208 1280 Gene3D - 381 634 IPR027417 -
Lal5g0208 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 619 IPR003439 GO:0005524
Lal5g0208 1280 SUPERFAMILY ABC transporter transmembrane region 696 1019 IPR036640 GO:0005524|GO:0016021
Lal5g0208 1280 CDD ABC_6TM_Pgp_ABCB1_D2_like 703 1018 - -
Lal5g0208 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 621 IPR027417 -
Lal5g0208 1280 Gene3D - 1025 1278 IPR027417 -
Lal5g0208 1280 CDD ABC_6TM_Pgp_ABCB1_D1_like 59 344 - -
Lal5g0208 1280 ProSitePatterns ABC transporters family signature. 1175 1189 IPR017871 GO:0005524
Lal5g0208 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1026 1268 IPR027417 -
Lal5g0208 1280 SUPERFAMILY ABC transporter transmembrane region 46 367 IPR036640 GO:0005524|GO:0016021
Lal5g0208 1280 MobiDBLite consensus disorder prediction 622 668 - -
Lal5g0208 1280 CDD ABC_MTABC3_MDL1_MDL2 383 621 - -
Lal5g0208 1280 MobiDBLite consensus disorder prediction 622 643 - -
Lal5g0208 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 60 348 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal5g0208 1280 PANTHER - 11 1276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0208 Lal-Chr5 1800137 1807113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0208 34 1279 Calmodulin-binding Proteins AT2G36910 45.935 0.0 1080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0208 K05658 - gmx:100800034 1974.13