Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0204 ATGGGAAAAGCCAATAGTTCTTCTTCTTCTATTAGCAGCACCAACCATCACTTTGTTATTTCAACTGCATCCTCTCTCACACAATTCAACAATGAAGAATTTCCACCAAATCTTAACCTTGACCTAAGCATTTCCACCACTCACTATGTTCCATCTTCTGTTCCAAGGGGGCATTGGCAACCAATGAATCTACTTCTAAGCAATTCATCACAAGCTATTGAAGCTAATGATTTCAATGATCATAGGAGCTTATATGTGAAGGTGTATATGGAAGGAATTCCAATTGGAAGAAAACTCAATATATTAGCTCATGGAGGATATTATGAGCTAGTAAAAACTCTTGAACACATGTTTGATACTACCATTCTATGGGGAAGAGAGATGGATGAAGTGCAAATAGAAGAAAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGAGATTTGGTTATGGTTGGGGATGTCCCTTGGGAGTTGTTCTTGTCCACTGTGAAGAGATTGAAGATTACAAGGGTAGACACATTTGGGTGTTAA 534 0.382 MGKANSSSSSISSTNHHFVISTASSLTQFNNEEFPPNLNLDLSISTTHYVPSSVPRGHWQPMNLLLSNSSQAIEANDFNDHRSLYVKVYMEGIPIGRKLNILAHGGYYELVKTLEHMFDTTILWGREMDEVQIEERCHVLTYEDEEGDLVMVGDVPWELFLSTVKRLKITRVDTFGC 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0204 177 SUPERFAMILY CAD & PB1 domains 77 169 - -
Lal5g0204 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 176 IPR003311 GO:0005634|GO:0006355
Lal5g0204 177 Pfam AUX/IAA family 74 171 IPR033389 -
Lal5g0204 177 ProSiteProfiles PB1 domain profile. 83 174 IPR000270 GO:0005515
Lal5g0204 177 PANTHER AUXIN-INDUCED PROTEIN 5 176 - -
Lal5g0204 177 Gene3D - 77 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0204 Lal-Chr5 1769341 1770857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0204 69 169 B3 DNA Binding Superfamily AT4G23980 34.653 1.27e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lal5g0204 AUX_IAA 7.6e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0204 K14484 - gmx:100818376 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0204 5 1769341 1770857 Lal13g0560 13 3654706 3655836 PCT
Lal5g0204 5 1769341 1770857 Lal24g0449 24 3155433 3158766 PCT
Lal13g0560 13 3654706 3655836 Lal5g0204 5 1769341 1770857 PCT
Lal24g0449 24 3155433 3158766 Lal5g0204 5 1769341 1770857 PCT