Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0203 ATGAATGAGAAAATACTTAGCTCCACCCATCAAGGGATAACAAGAAGTAGTTCCTCCCATAAAATTTCCTCGTTTGGAAATGATTTCCTTGAACTAGGATGTGAAAATGGTAAAATTGTTGTAAAAGGTGGTTCATCAAATATAACACAACATAACCCTTCATGCAATATTGAGTATTCAACAATAAACACTTCACATAAAGATGAATCCACATACACTACAAAAACAACAAAGTTAAACAAATTATGCTCACTTTTGAATAATCATTTCCTACCTCAAACCAATGACCAAAATGATTTGAAATCCTCACAAAACAACAAGAGTTTCAATAATCTTGAAGAAGAAAAAAAGTCTATAAATGATGAGTTTTTGCATTCATCATCTTCACTCAAGAAACCAGAAATGGTTCATTCAAGTCATCAAGCACCAGAATCAAATTCAAAGAAACTCAAGTACTTGAAAAATTGTGATCAAAGAAAAGTGAAGGTGAACAATTTCTCAAACTTTTTAGTACCTAAAGTGTTTCTTAAATCTAATAAGCCAATAAGAAATGAAACTTTTGCAAAGTTAGAGAAGATTGAAGTAGCAAAAGGATCAAAGGGTCTTAAAGGATTATTTCATGATCAAGAAACTTCTTTAACTGATAATAAATCAAATGATCCTATATCCCTTGTTGTTGTTGCAAGAAGTGATGAAAAAACACCACTTCATGATGAGAATTCTGAAGCTGTTGCTATTGTTAGAGCAAAAGGAAAAGCTAAAAGTAACTTATGTGATGAACCCTTGTTCTCATCTTCTCCTGTATGGTCACTTGAAGCCTCAAATGACCCAAAATTTTGTATCATGAAACATGAAGACAGTGATGATGAATCAACTTATTGTAGCAGTGATAATGATGAAGAGACAGAAGATGTAGTAGTAAAGGAAACAACAGCACAAAAGGGTAACAATGTCAAGAGAAAAAGGAATGAAGAGACTTATAATTTATGTGAAAAGAAGCATAGTGATATAATGAACAAAAAGATGCATATATTGAAAGAGCTTATACCAAATTGCAATAAGGTGGATAAAGCTTCATTGCTAGATGATGCCATCAACTATGTAAAGAGCCTCAAGCTTCAATTAGAGATTATGTCAATGGGAAATGGACTTTGCATGCAACAAATGATGTTACCTCAATTAATGGGAACAGGAATGGGTTTCAGACCAAACACAACCATTAATCCATGGACCCCACATCAGTTACCTATTCCACCATTGTCCAATATCAAAGACAACAACACAATATTTCACAATATGTTTGGTTCTTTTTCCAACCAAATGCTACAAATCCCATCAATTCCACATCATGTACCTAATTTCATGCCTATGATGATTGGAAACAATTCACTAATGCCAAACACAACACCTACCAACATGCTAAAACATTTTCCTAACTCTTCTTTAACAACTCTAGATGTATCAGATTTACATGCAAAATCTGAATTATGTGGCACAAATCAAGCACCCTTTAACCACACTCCTAGTTATTATCCCTTTTATAATGCTACAAATAAAGAGGATAATAAATAA 1572 0.3289 MNEKILSSTHQGITRSSSSHKISSFGNDFLELGCENGKIVVKGGSSNITQHNPSCNIEYSTINTSHKDESTYTTKTTKLNKLCSLLNNHFLPQTNDQNDLKSSQNNKSFNNLEEEKKSINDEFLHSSSSLKKPEMVHSSHQAPESNSKKLKYLKNCDQRKVKVNNFSNFLVPKVFLKSNKPIRNETFAKLEKIEVAKGSKGLKGLFHDQETSLTDNKSNDPISLVVVARSDEKTPLHDENSEAVAIVRAKGKAKSNLCDEPLFSSSPVWSLEASNDPKFCIMKHEDSDDESTYCSSDNDEETEDVVVKETTAQKGNNVKRKRNEETYNLCEKKHSDIMNKKMHILKELIPNCNKVDKASLLDDAINYVKSLKLQLEIMSMGNGLCMQQMMLPQLMGTGMGFRPNTTINPWTPHQLPIPPLSNIKDNNTIFHNMFGSFSNQMLQIPSIPHHVPNFMPMMIGNNSLMPNTTPTNMLKHFPNSSLTTLDVSDLHAKSELCGTNQAPFNHTPSYYPFYNATNKEDNK 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0203 523 MobiDBLite consensus disorder prediction 129 148 - -
Lal5g0203 523 PANTHER TRANSCRIPTION FACTOR PIF3 122 498 IPR044273 GO:0003700|GO:0006355
Lal5g0203 523 PANTHER TRANSCRIPTION FACTOR PIF3 1 109 IPR044273 GO:0003700|GO:0006355
Lal5g0203 523 MobiDBLite consensus disorder prediction 129 149 - -
Lal5g0203 523 Gene3D - 312 372 IPR036638 GO:0046983
Lal5g0203 523 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 393 IPR036638 GO:0046983
Lal5g0203 523 MobiDBLite consensus disorder prediction 1 21 - -
Lal5g0203 523 Pfam Helix-loop-helix DNA-binding domain 326 372 IPR011598 GO:0046983
Lal5g0203 523 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 109 - -
Lal5g0203 523 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 122 498 - -
Lal5g0203 523 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 371 IPR011598 GO:0046983
Lal5g0203 523 SMART finulus 328 377 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0203 Lal-Chr5 1747877 1752019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0203 260 417 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 40.964 3.62e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal5g0203 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0203 K12126 - gmx:100804665 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1410 3 20018893 20023032 Lal5g0203 5 1747877 1752019 LSH
Lal5g0203 5 1747877 1752019 Lal13g0563 13 3675188 3677299 PCT
Lal13g0563 13 3675188 3677299 Lal5g0203 5 1747877 1752019 PCT