Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0189 ATGGCTTTGCATGAGTGGTACGGCATGGTTAAAGGGAAACTTGATTCTAAAGAGATGAACACAAAAACATGTGTAGTTGATCAATCTTCTCTACCTGAGAATGATTTCTCTGAGCTGGTTTGGGAAAATGGCCATATTTCAATGTTGGGTCAGTCTAATATTACTAGAAAGATCCCAACTTTTCAATTTCACAAGGGTCATGATCCTAAAGATGTAGGGTATGTTAATACTAATACTAATACTAATACTAATGCTACAAACTTAAGGATGTTAAGGTTTGAAGGTGATTTAGATAGTGAATTGAATGAAATTAAAATACTAGATGAAGATGTGTTACCTTGGTTGAATTTCGGAATTGATGACTATAGTTCTGATTTCTTACCTGGGATAACCATGAATGATTTTTCATTATTCGATAAGAGAAGTGTATTTAAGGACTCTCATACGAGCTCATCATCATCGTCATCATCACATCAAACATCGTTTGCATTTTCGGTTAAATCTAGAGTGTCGAATATAACCGAAAATAATGCGAGTAATGTTGTGGAAACAACTCAAACACCATCTGATTCAAGTGGTTTTTCTAGCTTAAGGATGGAGAAGCAAGATCCAATTGTGTCTAGTAATAGTTGCACCATAATGAATTTCTCTCATTTTGCAAGACCTGCTTCTATAGTGAAATCTAATCTTAAGAACATTGATATGGGAGATATGAATAAAGGTAATGTTGCAACAAGAGTAGTGTTAAGTGGTGAATGTCCAAAGGAAACAGCTTTTCATGTTATGGAGCCATCCAAGGTTGATTTCAAACCATTCGAGCCGAAATCGCGTGAGCTGAATGCTGCTGTTTCTGAGCAGTGTAATCATACTTGCGATGAAGATGATTCAAAGATTGATCGAGCTTTGGATTTAGTTCTCGGTAAAGAACATGAAGCTGTTGTTGAAAATAGAATTGACCCAGCAATAGCCTCTTCCTCTGTTTGCTCTGGAAATGGTGCTAAGAGATGTTCGGATGATCCAAATCAAAGTTTGAAGCGAAAAAGTCGAGACACCAAAGATTCTGAGTCCCAAAGTGAAGATCCTGATGAAGAATCTGTTGGTGTTAAAACGACAGCTCCTGCACGAGGCGCTATCGGTTCCAAGAGAAGCCGTTCGGCTGAAGTGCATAATCTATCTGAAAGGAAGAGAAGAGACAGGATCAACGAGAAGATGCGTGCATTACAAGAACTCATACCAAACTGCAACAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAAGTTCAAGTTCAAATTATGTCAATGGGATCTGGTTTATATATGCCTGCAATGATGATACCTTTGGGAATGCAGCATATGCAAGCATCACACGTTGCTCCATTTTCACCTATGGCTATGCAAATGGGTTATGGAATGAGAATGCATGAAAATAATGGAGGATCTTCAAGATTCCCAATGGCTCATGTTCCTCAAATTCAAGGAACTAATCTCGTTTCGGCACATATGTCTGGAGCAACTGATTTACATGGGATGGCAGCAAGATCATACCCTCAAGTTTTCGGAATTTCTAATCCGGGACTTTCCGTGCCGATGCCATGTTCTCCCTTACTTCCTTTCCAAGGAGAGTCTCTTATGAACCAATCATCTCTAGGACTAAATACATCTGCAACAGCAGGACTAATCGAAACTGTCAATTCGGTTTCAACGTCGTCGAGCTTAAAGAATCCAATGCCAAATTTGAGCTCACAAAGGATAAGATTTCACTATGATATTCAGTTTCAATTAAGGGGTTGTTCTATTTATAGAACTGTTTTTACTTACCGAGCCAAGCTGACTTTGGTTGCTCGGTCAGATCCAGGCAGACTGACCTTGGCTGCTCGGTCAGATCCAGGCACGTTGGGCTTGGCTGCTAGACACTGGCTTGACCAGCTCGGCCACGATGACTTGGGCGTCTCAGTCAGATTGACTTATTTGCCTAGGCATAGATTTGGCCAGCTCGATCATGATGACCAGGAGGTCTTGGTCATGTTGGCATTTGTTGAGGCATGGCTTGGCATTGTTGAGGCATGA 2091 0.4027 MALHEWYGMVKGKLDSKEMNTKTCVVDQSSLPENDFSELVWENGHISMLGQSNITRKIPTFQFHKGHDPKDVGYVNTNTNTNTNATNLRMLRFEGDLDSELNEIKILDEDVLPWLNFGIDDYSSDFLPGITMNDFSLFDKRSVFKDSHTSSSSSSSSHQTSFAFSVKSRVSNITENNASNVVETTQTPSDSSGFSSLRMEKQDPIVSSNSCTIMNFSHFARPASIVKSNLKNIDMGDMNKGNVATRVVLSGECPKETAFHVMEPSKVDFKPFEPKSRELNAAVSEQCNHTCDEDDSKIDRALDLVLGKEHEAVVENRIDPAIASSSVCSGNGAKRCSDDPNQSLKRKSRDTKDSESQSEDPDEESVGVKTTAPARGAIGSKRSRSAEVHNLSERKRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQVQVQIMSMGSGLYMPAMMIPLGMQHMQASHVAPFSPMAMQMGYGMRMHENNGGSSRFPMAHVPQIQGTNLVSAHMSGATDLHGMAARSYPQVFGISNPGLSVPMPCSPLLPFQGESLMNQSSLGLNTSATAGLIETVNSVSTSSSLKNPMPNLSSQRIRFHYDIQFQLRGCSIYRTVFTYRAKLTLVARSDPGRLTLAARSDPGTLGLAARHWLDQLGHDDLGVSVRLTYLPRHRFGQLDHDDQEVLVMLAFVEAWLGIVEA 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0189 696 MobiDBLite consensus disorder prediction 339 366 - -
Lal5g0189 696 CDD bHLH_AtPIF_like 384 446 - -
Lal5g0189 696 PANTHER TRANSCRIPTION FACTOR PIF3 1 591 - -
Lal5g0189 696 SMART finulus 390 439 IPR011598 GO:0046983
Lal5g0189 696 MobiDBLite consensus disorder prediction 177 196 - -
Lal5g0189 696 Gene3D - 379 442 IPR036638 GO:0046983
Lal5g0189 696 MobiDBLite consensus disorder prediction 328 400 - -
Lal5g0189 696 Pfam Helix-loop-helix DNA-binding domain 388 434 IPR011598 GO:0046983
Lal5g0189 696 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 384 433 IPR011598 GO:0046983
Lal5g0189 696 PANTHER TRANSCRIPTION FACTOR PIF3 1 591 IPR044273 GO:0003700|GO:0006355
Lal5g0189 696 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 381 444 IPR036638 GO:0046983
Lal5g0189 696 MobiDBLite consensus disorder prediction 386 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0189 Lal-Chr5 1639905 1643495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0189 1 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.595 1.22e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal5g0189 HLH 9.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0189 K12126 - gmx:100794974 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0189 5 1639905 1643495 Lal5g0189 5 1639905 1643495 ECH