Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0188 ATGGACTATAGATGGACCAATGGTAAGTATGAAACTGGTGGCCATGACAGGAAGCAATCTAAAAAGGATAAGGCATATCGGGACTCCCTTATTGATGATTTTTCGGAGGATTTTCGCTTGCCAATCAATCACAGGCCAACAGAAAATGTTGATCTGGAAAATGTAGAACAAGCATCTCTGGACACACAGTTATCATCATCTAATGTTGGCTTTAAGCTTCTCCAAAAGATGGGTTGGAAAGGAAAGGGTCTTGGGAAGGATGAGCAAGGAATCACTGAGCCAATAAAATCTGGGATCAGAGATCCAAGATTGGGGGTTGGTAAACAAGAAGAAGACGATTTTTTCACCGCGGAGGAAAATGTCCAGCGAAAAAAACTTGATATTGAGTTGGAGGAGACAGAGGAGCATGTGAAGAAGCGGGAGGTATTAGCTGAACGTGAGCAAAAAATTCAAACTGACGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTGGCAATGGAGTTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGTTTCAAACAAATGAAGGAAATGCATGGTAGTAGCAGCCGGGACGACAGACAAAAGCGAGAACAGCAGCGTCAAGAGAGAGAAATGGCTAAGTTCGCTCAAATTGCTGATGCTCAAAAGCAGCAACAACTTCAACTCCAGCAAGAGTCTGGATCTGCACCTGTTTCCTCTGAATCTAAAACAGCTACCGCACTTACCGATCAGGAGCAGCGGAATACTTTGAAGTTTGGGTTTTCTTCTAAAGGCAGTGTTTCCAAGATCTCTTTTGGTGCCAAGAAGCATAATGCTGCAAAGAAGGAAAAGGTTTCTATATCTTCTGTATTCGGCAATGATAGCGACGAAGAATAG 915 0.424 MDYRWTNGKYETGGHDRKQSKKDKAYRDSLIDDFSEDFRLPINHRPTENVDLENVEQASLDTQLSSSNVGFKLLQKMGWKGKGLGKDEQGITEPIKSGIRDPRLGVGKQEEDDFFTAEENVQRKKLDIELEETEEHVKKREVLAEREQKIQTDVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEREMAKFAQIADAQKQQQLQLQQESGSAPVSSESKTATALTDQEQRNTLKFGFSSKGSVSKISFGAKKHNAAKKEKVSISSVFGNDSDEE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0188 304 MobiDBLite consensus disorder prediction 1 25 - -
Lal5g0188 304 MobiDBLite consensus disorder prediction 192 222 - -
Lal5g0188 304 SMART G-patch_5 64 109 IPR000467 GO:0003676
Lal5g0188 304 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Lal5g0188 304 SUPERFAMILY beta-beta-alpha zinc fingers 159 195 IPR036236 -
Lal5g0188 304 MobiDBLite consensus disorder prediction 225 260 - -
Lal5g0188 304 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Lal5g0188 304 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Lal5g0188 304 MobiDBLite consensus disorder prediction 192 260 - -
Lal5g0188 304 MobiDBLite consensus disorder prediction 279 304 - -
Lal5g0188 304 MobiDBLite consensus disorder prediction 9 25 - -
Lal5g0188 304 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Lal5g0188 304 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0188 Lal-Chr5 1626229 1631934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0188 1 304 C2H2 Transcription Factor Family AT5G26610 66.450 1.13e-129 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0188 - - gmx:100793206 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0188 5 1626229 1631934 Lal5g0188 5 1626229 1631934 ECH