Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0176 ATGGCGTCTTTACAACCAAACTTCGAATCAACGAATTTTGATACGTTTCATGAATCCAATCACAAAAGGCGTTGCAAAATCGAAGACCACGGTTCCATAACTCACATTCCATGGAGATCCGAAACAGTGCAGAGAATCTACACCTCCAAACTCACCTATCATCTCCGCCACGTTCTTCGCCGGATTCCAATTTCCGGCCGTGAAGTTCGTGTTTCCGCCGATCGAGTTCTGGCAGCGACGGCGAAGGGAAGAACTCGTTGGAGCCGAGCGATTCTGGCGAGTCGACTCAGCCGATGGAATATGAAATACAATAAGGTGAAGAAACTAACGAAGGGATTTGTGAAGAGAAAACCGGAGATTCGAACAAGGTTACCGGTAATTCAGAAGAAAGTGCGTGTTCTCAGCCGGTTAGTTCCAGGTTGCCGGGAAGTTTCGTTTCCGAATCTTCTAGAAGAAGCAACTGATTATATATCTGCGTTGGAAATGCAAGTGCGAGTCATGACGGCGCTCGCTGAGCTACTCGCCGGTGGTGCTCCGCCAGAAAGTCCACCGTGA 555 0.4865 MASLQPNFESTNFDTFHESNHKRRCKIEDHGSITHIPWRSETVQRIYTSKLTYHLRHVLRRIPISGREVRVSADRVLAATAKGRTRWSRAILASRLSRWNMKYNKVKKLTKGFVKRKPEIRTRLPVIQKKVRVLSRLVPGCREVSFPNLLEEATDYISALEMQVRVMTALAELLAGGAPPESPP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0176 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 177 IPR036638 GO:0046983
Lal5g0176 184 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 17 181 IPR044660 GO:0006355
Lal5g0176 184 PANTHER TRANSCRIPTION FACTOR BHLH150 17 181 - -
Lal5g0176 184 MobiDBLite consensus disorder prediction 1 21 - -
Lal5g0176 184 CDD bHLH_AtIBH1_like 121 171 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0176 Lal-Chr5 1535244 1535798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0176 38 167 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 48.630 6.02e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0176 - - aprc:113873135 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0176 5 1535244 1535798 Lal5g0176 5 1535244 1535798 ECH
Lal5g0176 5 1535244 1535798 Lal13g0607 13 3946203 3946763 PCT
Lal5g0176 5 1535244 1535798 Lal24g0482 24 3379674 3381344 PCT
Lal13g0607 13 3946203 3946763 Lal5g0176 5 1535244 1535798 PCT
Lal24g0482 24 3379674 3381344 Lal5g0176 5 1535244 1535798 PCT