Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0172 ATGTCTCACAACAGCGACAATGTGGGTGGAGTTGATAACACATTCAGAAGAAAATTTGACCGAGAAGAGTATTTGGAACGAGCTCGTAAGCGTGAGAAAGAGGAGGAAGAGGGTTCTCGATCCAAATCTAAAGCTAAAGGTCCTCCCGTGCAAAGGAAACCCTTGAAACATAGAGATTATGAAGTGGACCTCGAATCCCGCTTGGGCAAGACTCAGGGCATGCTTGCAAGTTGGTTTTTGAAGTGTAATGGAGGGAAGGTTGTTACACCAGTTGCACCACTAAGTCAGCAGGCAGGATACTATTGCTCAGTATGTGAATGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGCGTAGAACGTGCTTCTCTTGACCAGGTTCGGGAACGATTTGAAGTTCTTAAGAAACGTAAAGATCATGGAAGTTTCACAGAGCAAGATCTTGATGAACGGATATTAAAACAGCAACAAGAAGAGGAAGAAAGAAAGCGATTACGTCGCGAAAAGAAAAAAGAAAAGAAGGAAAAGGCTGTTGAAGAACCTGAAATGGATCCTGATGTTGCAGCCATGATGGGGTTCGGTGGTTTCGGTTCATCCAAGAAGTGA 651 0.4347 MSHNSDNVGGVDNTFRRKFDREEYLERARKREKEEEEGSRSKSKAKGPPVQRKPLKHRDYEVDLESRLGKTQGMLASWFLKCNGGKVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFEVLKKRKDHGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPEMDPDVAAMMGFGGFGSSKK 216
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0172 216 Coils Coil 163 195 - -
Lal5g0172 216 MobiDBLite consensus disorder prediction 172 216 - -
Lal5g0172 216 MobiDBLite consensus disorder prediction 28 43 - -
Lal5g0172 216 SUPERFAMILY beta-beta-alpha zinc fingers 96 141 IPR036236 -
Lal5g0172 216 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 7 216 IPR040107 GO:0000398|GO:0005681
Lal5g0172 216 MobiDBLite consensus disorder prediction 172 198 - -
Lal5g0172 216 Pfam Zinc-finger of C2H2 type 100 124 - -
Lal5g0172 216 Gene3D Classic Zinc Finger 95 132 - -
Lal5g0172 216 MobiDBLite consensus disorder prediction 28 58 - -
Lal5g0172 216 SMART ZnF_U1_5 97 131 IPR003604 GO:0003676|GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal5g0172 Lal-Chr5 1488581 1493492 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0172 4 162 C2H2 Transcription Factor Family AT3G05760 72.956 6.38e-79 231
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal5g0172 zf-C2H2_jaz 2e-06 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0172 K12848 - gmx:100527057 275.789
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0172 5 1488581 1493492 Lal5g0172 5 1488581 1493492 ECH
Lal5g0172 5 1488581 1493492 Lal18g0375 18 3210556 3216688 LSH