Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal5g0172 | ATGTCTCACAACAGCGACAATGTGGGTGGAGTTGATAACACATTCAGAAGAAAATTTGACCGAGAAGAGTATTTGGAACGAGCTCGTAAGCGTGAGAAAGAGGAGGAAGAGGGTTCTCGATCCAAATCTAAAGCTAAAGGTCCTCCCGTGCAAAGGAAACCCTTGAAACATAGAGATTATGAAGTGGACCTCGAATCCCGCTTGGGCAAGACTCAGGGCATGCTTGCAAGTTGGTTTTTGAAGTGTAATGGAGGGAAGGTTGTTACACCAGTTGCACCACTAAGTCAGCAGGCAGGATACTATTGCTCAGTATGTGAATGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGCGTAGAACGTGCTTCTCTTGACCAGGTTCGGGAACGATTTGAAGTTCTTAAGAAACGTAAAGATCATGGAAGTTTCACAGAGCAAGATCTTGATGAACGGATATTAAAACAGCAACAAGAAGAGGAAGAAAGAAAGCGATTACGTCGCGAAAAGAAAAAAGAAAAGAAGGAAAAGGCTGTTGAAGAACCTGAAATGGATCCTGATGTTGCAGCCATGATGGGGTTCGGTGGTTTCGGTTCATCCAAGAAGTGA | 651 | 0.4347 | MSHNSDNVGGVDNTFRRKFDREEYLERARKREKEEEEGSRSKSKAKGPPVQRKPLKHRDYEVDLESRLGKTQGMLASWFLKCNGGKVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFEVLKKRKDHGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPEMDPDVAAMMGFGGFGSSKK | 216 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal5g0172 | 216 | Coils | Coil | 163 | 195 | - | - | |
Lal5g0172 | 216 | MobiDBLite | consensus disorder prediction | 172 | 216 | - | - | |
Lal5g0172 | 216 | MobiDBLite | consensus disorder prediction | 28 | 43 | - | - | |
Lal5g0172 | 216 | SUPERFAMILY | beta-beta-alpha zinc fingers | 96 | 141 | IPR036236 | - | |
Lal5g0172 | 216 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 7 | 216 | IPR040107 | GO:0000398|GO:0005681 | |
Lal5g0172 | 216 | MobiDBLite | consensus disorder prediction | 172 | 198 | - | - | |
Lal5g0172 | 216 | Pfam | Zinc-finger of C2H2 type | 100 | 124 | - | - | |
Lal5g0172 | 216 | Gene3D | Classic Zinc Finger | 95 | 132 | - | - | |
Lal5g0172 | 216 | MobiDBLite | consensus disorder prediction | 28 | 58 | - | - | |
Lal5g0172 | 216 | SMART | ZnF_U1_5 | 97 | 131 | IPR003604 | GO:0003676|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal5g0172 | Lal-Chr5 | 1488581 | 1493492 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal5g0172 | 4 | 162 | C2H2 Transcription Factor Family | AT3G05760 | 72.956 | 6.38e-79 | 231 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lal5g0172 | zf-C2H2_jaz | 2e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal5g0172 | K12848 | - | gmx:100527057 | 275.789 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal5g0172 | 5 | 1488581 | 1493492 | Lal5g0172 | 5 | 1488581 | 1493492 | ECH | |
Lal5g0172 | 5 | 1488581 | 1493492 | Lal18g0375 | 18 | 3210556 | 3216688 | LSH |