Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0171 ATGGAAATGGAGAAAAAACGTTCCAAAGGAAGCTTTTTCAGCTTATTTGATTGGAATTCCAAATCTAGAAAAAAGCTGATTTGGAACAATCCTAGTTTACCTGATGGTTCAAAGCAAGGAAATGAAAATGTGGAGAGCATGCCAAAGACACAGATTAGTAGGATTAAGGTGGATGAGAGTGGAGCAAGTCCAAGTAACAATGGATGTTCGGATTTTACTTCATTTGGTAGTGATGAAGAATATGGAAGTAAAGCCCCTGGGTTAGTAGCAAGACTTATGGGTTTGGATTCGTTGCCAACTTTGGCAGCCACTGAGGTCTCCTCCACTTCATTATATGGCTCGAACTCTCATGGAGCTTCACGTTGCCATGACGATGCTCTTTATTCAGAGGACGACTTTTGCGCGGTGGAATATATAAATGTGCCACTTAAGGTGGAGAAGTCTTCTCGGGATGCAATGGAATCAAGAGCATACAAAGTGGGAAACTGGCCAATGAAGAGGTTCCAAACCGAAATATTGCCTCCAAAGTCAGCTAAACCCATTCCGGTTACTCACAATAAATTGTTATCACCTATTAAGAATCCCGGTTTTGTGTCCCCAAGGAATGCAGCTCACATAATGGAGGCATCTTCCAAAATAATCGAGGGAACCCCTCGGCCATATATGAGAAATAAAATGTCGTCAGTTGGACCTTCATCTGCTCCCTTGAGAACTCTTGATTTAAAAGAGAGATTGGAAGCTTTACTAAATGCATCTGTGCCTGAAAAATCTGTGGGTCCGAGCACTGCCAACCTTGCAAATGGCAAGCCTAGTGATAGTAGCAGTAATTTATATAAATGTGCTTCGACTTTCAAGGGTTTGAGAGATTCAGAAAAAACTAGTTCTTGCAACTCAGCAAGTAAAGGAAAACCAGTTTCACAAGCAATACAAGCCCAAACCAATGTTCAGAGCAGGGATATATTGACTTCAAAAAAGAAGTATAGAAAGCAGAAAGAACAGACTGAGATAAAGTCAAACCATTTGTCCAGGAACCAGAAACCAAGTACAGAACAAGTGTCACAGCAGAGAACTGGCACAAGCCGCAATAGCACTGTGCTTCGGAAGAATGGTCAGAAACAGAATAGTTTAACCAACAAAGGTAAATCAACTTCAAAAATAGACTCCAATAAGCCAAGAACACAAACTTCATCTCCAGAAAGTTCTACTGGAATAAGGAGAACAGTGAACAAGGGTGCTATAAATGGCAACATTCAGTCTAAAAGGTCAAGCACTAGAGCAACTGCTAACCAAAAAGAACTCCCATCTTCCGATTGTATATCCCAAAAGAAAATGTATATCAACACGAATGTTCATGAGGCAAGAGGTCCGGGTAAAGCGGTAAATAACTTTGAAAGTAAGTCCATAAAATGCAATATTACAACTGATGGAAGTATCGATCAGGATGATGCACTTAACATGAAAGAAAGCAAGGATGTTATTTCATTCACGTTTACATCTCCCTGGAGTAGAAGCATGCCTGGGTCGTTGTCCTATGCTGAGCAAGTGGTGGGAAGTAGAAATATAATCGATGTCGATTCTCTTGGGCATAGTGATAATCTTTATCCCAAAAAATTATCGTTATCCCCTCCAGGGTTACATATGATAGATGGTGATACTCTAAGTGACCTGTTGGAGAATAGGCTGCAAGAATTGACATCTACAATGAGTTTACCTCAATGTCCCTTGGCCATAGAAGAGTCTTCGGCTGATTTGAGATCTACCGTGCAAGAGAAAGTTCCCAGTTTAGTAAACATCGCATTTGAGGAACAAGACAGAGGCTTTCACCGCTACCAGTTTAGTGATAAACTGGATAGCATAAATGGCTGTCATTCTTCAAATGATGATCCAGTATTTTACATGAATCAGCAGCTGCAGACATCCGAAGCGATCGAAGACCCTAGCTGTAGCAGCAATAGTGAAAATGGAAATGATCCAGGTTGCCAGCATCCCAGAGCTGTCACAGTTTCGGAAAGTCCTTCCGCCAGTCAAAGTTGCCTGGATAGTGAAGATGGTGCATATGGGAGCACAGTTTATTCGTCCATGCAAGATGAAGAAGTATCGATTTTTTCTGAGATAAATGAATGTGTATCACTTGAAAATGAAGTCAGTTCAGGGAGAAGCTCTTCCATATTGCCAGTGGAAAATATGGTTGTGAAACACTTTACCGAAATAAAAAAATTGGAGGATATTAAAAGATCGAGGGGCATCGGGCTTGAATATGTTCAGGATATACTCACCAATGCAGAGTTTATGGCAGAAGAATTTGTCATCGGTCAAACCAATACCGTCATTATGCCAGATGTCTTTGATCAGTTGGTGAATGCGAGCAATGGAACAGAAAACTGTGAAGAGTATTCTATACTTGAAAGGAAGATTGTATTCGACTTTGTGAATGAGTGCATTGAGTTGAGATGTAAGCAAGCTTTTGTTGGAAGCTGCAAACAATGGCTTGGATTGATGAGATCAATTAAAAGGAAGAGCTGGTTAGCACAAGAGTTCTACAAGCAGATGCTAGGTTTTAGAAACATGGAAGAAGAAGTAATGATCGATGAGCTTGTCAGCAATGACATGAGCACTAGCCGTGGGCGATGGCTCGATTTCGATGTTGAAGCCTTTGAAGAGGGAATAGAGGTTGAGGAGGACATACTAGATAATTTGATGGATGAATTGGTTTATGATATGTTGCATGTTTAA 2733 0.4072 MEMEKKRSKGSFFSLFDWNSKSRKKLIWNNPSLPDGSKQGNENVESMPKTQISRIKVDESGASPSNNGCSDFTSFGSDEEYGSKAPGLVARLMGLDSLPTLAATEVSSTSLYGSNSHGASRCHDDALYSEDDFCAVEYINVPLKVEKSSRDAMESRAYKVGNWPMKRFQTEILPPKSAKPIPVTHNKLLSPIKNPGFVSPRNAAHIMEASSKIIEGTPRPYMRNKMSSVGPSSAPLRTLDLKERLEALLNASVPEKSVGPSTANLANGKPSDSSSNLYKCASTFKGLRDSEKTSSCNSASKGKPVSQAIQAQTNVQSRDILTSKKKYRKQKEQTEIKSNHLSRNQKPSTEQVSQQRTGTSRNSTVLRKNGQKQNSLTNKGKSTSKIDSNKPRTQTSSPESSTGIRRTVNKGAINGNIQSKRSSTRATANQKELPSSDCISQKKMYINTNVHEARGPGKAVNNFESKSIKCNITTDGSIDQDDALNMKESKDVISFTFTSPWSRSMPGSLSYAEQVVGSRNIIDVDSLGHSDNLYPKKLSLSPPGLHMIDGDTLSDLLENRLQELTSTMSLPQCPLAIEESSADLRSTVQEKVPSLVNIAFEEQDRGFHRYQFSDKLDSINGCHSSNDDPVFYMNQQLQTSEAIEDPSCSSNSENGNDPGCQHPRAVTVSESPSASQSCLDSEDGAYGSTVYSSMQDEEVSIFSEINECVSLENEVSSGRSSSILPVENMVVKHFTEIKKLEDIKRSRGIGLEYVQDILTNAEFMAEEFVIGQTNTVIMPDVFDQLVNASNGTENCEEYSILERKIVFDFVNECIELRCKQAFVGSCKQWLGLMRSIKRKSWLAQEFYKQMLGFRNMEEEVMIDELVSNDMSTSRGRWLDFDVEAFEEGIEVEEDILDNLMDELVYDMLHV 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0171 910 MobiDBLite consensus disorder prediction 28 49 - -
Lal5g0171 910 Coils Coil 882 902 - -
Lal5g0171 910 MobiDBLite consensus disorder prediction 289 320 - -
Lal5g0171 910 MobiDBLite consensus disorder prediction 289 435 - -
Lal5g0171 910 MobiDBLite consensus disorder prediction 666 681 - -
Lal5g0171 910 MobiDBLite consensus disorder prediction 321 339 - -
Lal5g0171 910 MobiDBLite consensus disorder prediction 255 276 - -
Lal5g0171 910 MobiDBLite consensus disorder prediction 642 681 - -
Lal5g0171 910 PANTHER DUF4378 DOMAIN PROTEIN 1 910 - -
Lal5g0171 910 Pfam Domain of unknown function (DUF4378) 751 902 IPR025486 -
Lal5g0171 910 Pfam DUF761-associated sequence motif 78 100 IPR032795 -
Lal5g0171 910 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 910 - -
Lal5g0171 910 Coils Coil 324 344 - -
Lal5g0171 910 MobiDBLite consensus disorder prediction 340 435 - -
Lal5g0171 910 MobiDBLite consensus disorder prediction 642 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0171 Lal-Chr5 1483162 1487751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g0171 3 908 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 31.001 1.41e-91 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0171 - - lang:109330253 1500.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0171 5 1483162 1487751 Lal18g0374 18 3202287 3207613 ECH
Lal5g0171 5 1483162 1487751 Lal5g0171 5 1483162 1487751 ECH
Lal3g1433 3 20266022 20270789 Lal5g0171 5 1483162 1487751 LSH
Lal5g0171 5 1483162 1487751 Lal18g0374 18 3202287 3207613 LSH
Lal5g0171 5 1483162 1487751 Lal13g0622 13 4044514 4049407 PCT
Lal13g0622 13 4044514 4049407 Lal5g0171 5 1483162 1487751 PCT